Sander lucioperca (pikeperch): 116063922
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Entry
116063922 CDS
T07345
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116063922 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116063922 (ddx42)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116063922 (ddx42)
Spliceosome [BR:
sluc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116063922 (ddx42)
Complex B
116063922 (ddx42)
Complex C
U2 SnRNP specific factors
116063922 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
116063922
NCBI-ProteinID:
XP_031174787
Ensembl:
ENSSLUG00000020081
UniProt:
A0A8C9ZZ36
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All DBs
Position
21:complement(24468671..24479333)
Genome browser
AA seq
912 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGRKEEPSLPQKSHTTFGGPPGSSGYGRGQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
EDQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTLEEEDENIDY
DSDGNPIASTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEEVSNLTGTQVLELRHKLNLR
VSGAAPPKPCTSFAHFNFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEAGEGPIAIIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVSYLVFDEADRMFDMGFEYQVR
SVASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQMVEMLPSST
DKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGYSLGLLHGDMDQSERNKVIS
DFKKQNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TNKDTTFAGDLVRNLEGANQAVSKELMDLAMQNPWFRKSRFKGGKGKKMNIGGGGLGYRE
RPGLGAESSERSSSSLLSSTSSFEGYSKPATGAMGDRMSAMKQAFQAQYKSHFVAASSGP
PKLTTKSNSSSCWTSAGSLSSVPTESPNSSERSQSAALCMSGFTSAGSLSSVPTSQTSSQ
QSYPPPPPQRDIPRDRHGEDRGRHDSYHRHSDRSDRHSGEDRYGDQDRHGDGDRDRYGDR
DRDRHGDRDRYSSSSSSRHSDSRNGDASKRDRDDRRSERDGGDRGNGEGRDRGDDSFAVP
EPPKRRKSRWDN
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccgggtgtgaagcgagggtttgggtttggaggcttttcc
cttgcagggcgaaaagaggaacccagccttcctcagaaatctcacacaacatttggagga
cctccaggatcaagtggatatgggaggggccagcagctcccatcgttctacaaaataggg
acaaaaagagctaattttgatgaggaaaatgcgtattttgaagatgatgaggaggaatcc
agcagcaatgtggatcttccgtacatcccagctgagaactcgcccacacggcagcagatg
cagtctggtggtgggtcagacagtgaagatgacccactggatgccttcatggcagaggtt
gaggaccaagcagctaaagacatgaggaaactggaggaaaaggaaaaagagaaaaagtca
gccaagggtattcgtgatgacattgaagaagaagatgaacaagaagcctactttcgctac
atggcagagaatcccacagccgggctgaccctagaggaagaggatgaaaacattgactat
gacagtgatggtaacccaatcgcctctactaccaagaaaataatcttgccgcttcctccc
attgaccactccgagattgattacccaccttttgagaaaaacttctacaatgagcatgaa
gaggtcagcaacctgactggaacccaagtgttagagttaaggcacaaattgaacctaagg
gtatctggtgctgcccctccaaaaccttgcactagctttgcccacttcaactttgatgag
caactaatgcaccaaatccgcaagtctgagtacactcagcccacaccgattcagtgccag
ggtgtgcccatagctctgtctggacgtgacatgattggtattgcaaaaactggcagtggc
aaaactgcagcttttatctggcccatgctggttcacatcatggaccaaaaggaactggag
gcaggagaagggcccatcgccatcattgtgtgtcccaccagagagctttgtcagcagatc
catgcagaatgtaagcgttttgggaaagcctactctttgcgttctgtggcggtttatgga
ggaggcagcatgtgggagcaggccaaagctctgcaggagggagcagagattgtggtgtgc
actccgggtcgtctgattgaccatgttaagaagaaggccacgtcactgcagagagtgtca
tacctggtgtttgatgaggcagatcgcatgtttgatatgggctttgaatatcaggttaga
tctgttgctagccatgtccgcccagacagacagacccttctgtttagcgctactttccga
aagaagatagagagactggccagagacatcttggtagatcctattcgtgtggtgcaggga
gacatcggagaggccaatgaggatgtcacccagatggtggaaatgctgcccagctcgaca
gataaatggggctggctgactcggcggctggtcgagttcacctcctccggctcagttctc
atcttcgttaccaagaaggcaaactgtgaggaattggctactaatctgactcaggagggc
tacagcctgggcctcctacacggagacatggaccagagtgagaggaacaaggtcatcagc
gacttcaagaagcagaatttgcctgttctggtggccactgatgtagctgctcgtggtctg
gacatcccatccattcgcacagtggtaaactacgacgtggcacgagacatcgatacgcac
acacacagaattggtcgaactggtcgcgctggagagaagggtgtcgcttacactctcctc
accaacaaagacaccacattcgctggtgacctcgtcagaaatctagagggagctaatcaa
gccgtttccaaagaactgatggatttagccatgcagaatccctggttcaggaaatcccga
ttcaagggtggtaaaggaaaaaagatgaatattggtggaggtggtcttggttacagagag
agaccaggcctgggggctgaaagttctgaacgcagcagcagcagcttgttgtcttccact
agcagctttgaaggttacagcaaaccagccactggggctatgggagatcgcatgtctgcg
atgaaacaagccttccaggctcagtataaaagccactttgtggctgcgtccagcggccct
ccaaagctcaccactaagtctaatagctcttcgtgctggaccagtgccggcagcctgagc
tctgtgccgactgagtcccctaacagttcagaaaggtcccagagcgccgccttgtgcatg
tctggcttcaccagcgctggctccctgagctctgtgcccaccagtcaaaccagttcacag
cagagctaccctccacctcccccacagagagacatcccacgagacagacacggtgaggac
cgagggcgccatgatagttaccaccgccacagcgacaggagcgatcgacacagtggagag
gatcgctatggagaccaggatcggcatggagacggagaccgggatcgctatggcgacaga
gatcgggaccgccacggggaccgggaccgctacagcagcagcagcagcagccgccacagc
gatagtcgcaacggagatgcaagcaagagggacagagatgaccggaggagtgagagggat
gggggagacagggggaatggggagggcagggacagaggagatgatagctttgctgtccct
gaaccaccaaagcgtagaaagagcaggtgggacaactga
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