Sander lucioperca (pikeperch): 116064395
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Entry
116064395 CDS
T07345
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
116064395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116064395
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116064395
Spliceosome [BR:
sluc03041
]
Complex C
Other components
Complex C specific factors
116064395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
AAA_22
Utp25_C
Cas3-like_C_2
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
116064395
NCBI-ProteinID:
XP_031175445
Ensembl:
ENSSLUG00000014556
LinkDB
All DBs
Position
1:37768163..37779645
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AA seq
614 aa
AA seq
DB search
METENRPQKRSHGEDERSGSEGSEDDDYVPYVPVKIRKHQMIQKMLRLRGKAVDEEQKDS
GEEQRDEDEGLGPRSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMS
VKEMAKGIIYDDPIKTSWKAPRYILNMPKTRHERVRKKFHILVDGDGIPPPIKSFREMKL
PPAILKGLKKKGIVHPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFTLPITMFALEQEK
RLPFFKREGPYGLIICPSRELARQTHGIIEYYCKLLEEEGAPQLRTALCIGGMSVKDQME
VVKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQ
RQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECL
QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVA
TDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGQTGIATTFINKGCDESVLMDL
KALLVEAKQKVPPVLQVLQTGDETMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQVTN
IGRKDYLAHSSMDF
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccgaaaatcgaccccaaaagagatcccatggggaggatgaaaggtctggctca
gaaggatcagaggatgacgattatgttccttacgttccagtcaaaataagaaaacatcaa
atgatacagaagatgttacgtctgcgaggaaaggcagtggacgaggagcagaaggacagt
ggggaggagcagagagatgaggacgagggtcttggtccacgctccaacgtcagtctcctt
gaccagcatcagcacctcaaagaaaaagcagaagcccgtaaggagtccgccaaggagaag
cagctgaaagaggaagagaagattcttgagagcgttgcagagggcagagctctaatgtcc
gtaaaagaaatggccaaaggtatcatatatgatgatcccataaaaacaagctggaaggca
ccgcgctacatcctgaatatgccaaagacccgacatgagcgcgtcaggaagaagtttcac
atccttgttgatggagacggaatccctcctccaatcaaaagtttcagggagatgaagctt
ccaccagcaatcctaaaaggtttgaaaaagaagggaattgtgcatcccacgccaattcaa
attcaaggaatccctacagttctgtcaggtcgagacatgattggcatagccttcactggt
tctggaaagactttggtcttcactctgccaatcaccatgtttgcgctggagcaggagaaa
aggctgcctttctttaagagagagggaccatatggactcatcatctgtccttcacgagag
ttggcgaggcagactcacggcatcatcgagtactactgcaagctgctggaggaggaagga
gctcctcagctgcgcactgccctctgcatcggaggaatgtctgtcaaggatcagatggag
gtagtaaaacatggtgtccacatgatggttgctacccctggcagactgatggacttgctg
cagaagaagatggtgagtctggacatctgccgctacttggctctggatgaggctgatagg
atgattgacatgggctttgaggaagacatcagaaccatcttctcctatttcaagggacaa
aggcaaaccctgctttttagcgccactatgcccaagaagatccagaactttgccaagagt
gcgctggtcaaacctatcactatcaacgtaggcagggccggagctgccagcttggatgtc
atccaggaagtggaatacgtcaaagaggaggccaagatggtgtacctgctcgagtgtctc
cagaaaacaccacctcctgtgctgatatttgctgagaagaaggccgatgtagatgccatc
catgagtatctcttgctaaaaggagtagaagcggtggccatccatggaggaaaagatcag
gaggaaagaacaaaagccatcgaggcatttaaagaaggaaagaaagatgtcttagttgcc
acagacgttgcctccaagggtctggatttcccagctatacagcatgtagtgaattatgac
atgccggaggagatagaaaactatgtccatagaatcggaagaactggaagatcaggccag
accggtattgccactacattcatcaataaaggctgtgatgagtctgtgttgatggacctt
aaagctctgctagttgaagccaagcagaaggttcctccagtcctccaggtgctccagaca
ggagatgagaccatgctggacatcggaggagagaggggctgtacattctgcggcggtctg
ggtcatcgtattacagactgccctaagttggaggccatgcagaccaagcaggtcaccaac
atcggacggaaagactacctggctcacagctcaatggacttctaa
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