Sander lucioperca (pikeperch): 116064773
Help
Entry
116064773 CDS
T07345
Symbol
thoc2
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03013
Nucleocytoplasmic transport
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116064773 (thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
116064773 (thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116064773 (thoc2)
03041 Spliceosome [BR:
sluc03041
]
116064773 (thoc2)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116064773 (thoc2)
Spliceosome [BR:
sluc03041
]
Complex C
Other components
EJC/TREX
116064773 (thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116064773 (thoc2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
116064773
NCBI-ProteinID:
XP_031175867
Ensembl:
ENSSLUG00000025436
UniProt:
A0A8D0ATB8
LinkDB
All DBs
Position
13:10999054..11026608
Genome browser
AA seq
1564 aa
AA seq
DB search
MATLILPGEWIKNWEKSGKHEFVQLCKELTEKTDHGRDIRDIQAALYELCWQVVHGNLKL
ELVASVLGDMMELRDDMPSILADVFSILDLETSALEEKNKREHYTQLVGACLFFVPEAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHLVLESIKSLIGCFNLDPNRVLDIILEVYESRSDQDEFFLSLIKSYMCEPLTLC
HILGFKFKFYQEPNEETPKSLYHIAAALLHHNLIELEDLYVHLMPVDATIIEEHKRDISE
AKQIARKLVMVVLPSEKSEDKDKEKEKEEEKNEKPPDNQKLGLLEALLRIGDWHNALSIM
DQMPSFYATSHKAIALALCQLVHLTVEPLYRRAGLPKGARGCVMHPLRSKRAPRPAESFE
DLRRDTFSMICYLGPHLSHDPILFAKIVRLGKSFMKEYQSDGRPDVKDKMETLLSCFLSI
ADQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLLVKVKAQTV
ERAKYIMKRLTKENVKQSGRQIGKLSHSNPTILFDYMLSQIQWYDNLIVPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTN
QLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDALLDHELALPLCLLMAQQRNGVVFLEGGEKHLKLVGHLYDQCHDTLLQFGGFLAS
NLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYAHQILSKYDELKKTEKGNRQQQKV
HKYVAACEQVMTPVHEAVVSLHPARVWDDLRPQFYATFWSLTMYDLAVPHSAYEREVNKL
KVQIKAIEENPEIPLNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNWLLA
KSTKNETITKFLQLCLFPRCIFSSIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSAIIY
TVASCTENESHRYGRFLSCMLETVTRWHSDRATYEKECVNYPGFLTIFRATGFDGGNKAD
QLDYENFRHVVHKWHYMLTKASVHCLETGDYTHIRNILIVLTKILPCYPKVLNLGQALEC
RVHKICLEEKDKRPDLYALAMGYSGRLKGQKVHMVPENEFHHKEQPARSATPANQQNGPG
STGKPATSTSKTEEGTSEDGDRGKDKSQGTTKPVNKANSAAAKVTTSNGNGALNSTKAIK
ERDDKEKSGKEKKEKKEKTPGSTPETKAENRREKQRDERAGKEERVAREGKEKTPKADRE
KVKAEEKSSKDDKAKAGNGEPMEPSRERDAIKESKSKEKGDRGAVAGSLKSPVPRSESAE
SERDHKRRKLDSHSSPSHSSSVKDNSNEPKESTSKHHANYNSVSRSKSREREMEKKDSDN
TQGRSKEKKEDKDRKDKKRDHAVNDRETSQESKRKKDENGTNSTKNSKSASPSCDSPLSA
EKEKSKRSKSSSKEKAESVKPERTSSGGKKESRHDKEKSEKKEKRDSSGGKEDKKHHKSS
DKHR
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacttatcctccctggtgaatggatcaaaaactgggaaaaatcaggaaaacac
gagtttgtacaactctgcaaagaacttacagaaaaaacagatcatggacgtgacattaga
gacatacaggccgccttatacgagctctgctggcaagttgtacatgggaacctgaagttg
gagcttgtcgccagcgtccttggggacatgatggaactccgagatgacatgccatcaatt
ttagcagatgttttcagtatactagatttagagactagtgcactggaagaaaaaaacaaa
cgtgaacattacacacaactggtgggagcatgtttgttttttgttcctgaggccatcctg
aaagagaggctggatccagaaacccttgaatctcttggacttataaaacaagcccatcag
ttcaatcagaagattgtaaaaatcaagactaaactattttacaagcagcagaagtttaac
ttgctaagggaggagaatgagggctatgccaaacttatcactgaacttggccaagacctc
tcaggcaacatcaccagccaccttgtcctggagagcatcaagtccctcataggatgtttc
aacttggaccctaatcgtgttttggacatcatcctggaggtgtatgagagtcgatctgac
caagatgagttcttcctgtctctcatcaagtcctacatgtgtgagccactcaccctttgc
cacatcctgggctttaagttcaaattctaccaggagcccaatgaggaaacccccaagtca
ctttaccacattgctgctgctctgcttcaccataacctgatagagctggaagatctctac
gtacatcttatgccagtagatgccactattatagaggaacacaaacgagatatctcagag
gccaagcagattgctcgcaagctggtcatggttgttctgccctcagagaaaagtgaagac
aaagacaaggagaaagaaaaggaggaggagaagaatgagaagccgcctgataaccagaag
cttgggctgttggaagcgctgcttagaattggagactggcacaacgccctaagtattatg
gaccagatgccgtccttctatgctacttctcacaaggccattgcgctggcactctgccag
cttgtgcacctgactgtggagcctctttacagaagggctggcctcccgaaaggggcaagg
ggatgtgtgatgcatccactgaggagcaagcgagcccctcggcctgcagagagcttcgag
gacctacgcagggacacattcagcatgatctgctacctaggtcctcacctctctcatgac
cctatcctcttcgccaagattgtgcgtctgggcaagtccttcatgaaagagtaccaaagt
gatggcagacctgatgtcaaagacaaaatggaaacattattgagttgtttcctgagcatt
gcagatcaggtgctactcccttctctttctctgatggagtgtaatgcttgcatgtctgag
gaactgtggggtctctttaaactctttccctaccagcacaggtaccggttatatggacag
tggaagaatgagacatataccagccatccactgttggttaaagtcaaagctcagactgtg
gaaagggccaaatacataatgaagcggttgaccaaagagaatgtgaaacaatctggaagg
cagattggaaaactgagccatagcaatcccaccatcctctttgattatatgctgtctcag
atccaatggtatgacaacctaatcgttccagtggtggactccttgaaatacctcacatcc
ctcaactatgatgtcttggcctattgcatcattgaggctctggcaaatcccgagaaggag
aagatgaaacacgatgacaccaccatctcctcatggcttcagagcctggcaagcctgtgt
ggagccgtgttcagaaaatacccaattgagttggctggccttcttcaatatgtcactaat
cagctaaaagcaggaaagagttttgacctgttgatcctgaaagaggtggtgcagaaaatg
gctggcattgagatcacagatgagatgacctcagagcagttagaggccatgacgggaggg
gagcaactcaaagctgagggtggctacttcggccagatcaggaacactaagaagtcatca
cagcgtctgaaggatgcactgctggaccatgaattggccttgcctctgtgtttactcatg
gcccagcaacgaaatggtgtggttttcttagagggtggagagaaacaccttaaacttgtt
ggccacctctatgaccagtgtcatgacacgttgttgcagtttggtggctttctggcctcc
aaccttagcactgaggactacatcaagcgggttccctccattgacatcctttgtaaccag
ttccacactccacatgatgctgccttcttcctgtctcggccaatgtatgcccatcagatt
ttgtctaagtatgatgagctgaagaaaaccgagaaaggcaaccggcagcagcagaaggta
cacaagtatgtggcagcctgtgaacaggtgatgacaccagtgcatgaggctgtagtatcc
ctccatccagccagggtctgggacgatctccgccctcagttctacgccaccttctggtcc
ctcaccatgtatgatctggccgttccacattctgcctacgagcgtgaggtcaacaagctc
aaggtccagatcaaggccattgaggagaacccggagatacccttgaataagaaaaagaag
gaaaaggaacgctgcactgccctgcaagaaaaactgcaggaggaggagaagaaacagctg
gagcacgtccaaagggttctacaccgtctcaaacttgagaaagacaactggttgttggca
aaatccacaaagaacgaaacaataacaaagttcctgcagctctgtctgttcccccgctgc
atcttctcttccatcgacgctgtgtattgtgcccgttttgtcgagctggtccaccagcag
aagacacccaacttctgcaccctcctgtgctatgacagagtgttctccgccatcatttac
actgtggccagctgtacggagaatgagtctcaccgctacggacgcttcctctcctgcatg
ctagagacagtgacccgttggcacagcgaccgcgcaacctatgagaaggagtgcgtcaat
tacccaggattcctgaccatcttcagagccacaggcttcgatggcgggaacaaagcagat
caactggattatgagaacttcaggcatgtggtgcacaaatggcactacatgctgactaaa
gcttcggttcactgcctggagacaggagattacacccacatccggaatattctcatcgtg
ctcaccaagatcctgccctgctaccctaaggtcctaaacctgggccaagcgctggagtgc
cgtgtccacaagatctgcctcgaggagaaggacaagaggccagacctctatgccttagca
atgggttattcaggtcggttgaaaggccagaaggtgcatatggtccccgagaatgagttt
caccacaaagagcagccagcacgcagtgccacccctgccaatcaacagaacggcccaggc
agcacaggcaagcctgccaccagcacaagcaagacagaagaggggacgtcagaggatggt
gatcggggcaaggataaatctcaggggaccacaaagccagtgaacaaagccaacagtgca
gcggccaaagtgaccaccagcaatgggaacggtgctcttaacagcaccaaagccattaaa
gaacgagacgacaaagagaaaagtgggaaggagaaaaaagagaaaaaggaaaagacacca
ggcagcactcctgagaccaaggcggagaaccgtcgggagaagcagagagacgagagagca
gggaaggaggagcgggtggcacgtgagggtaaggagaagacccccaaggcagacagggag
aaagtgaaggctgaggagaagagcagcaaagacgacaaggccaaagccggcaacggggag
cccatggagccgtccagggagcgcgatgccatcaaggagtccaagagcaaggagaaagga
gacagaggtgctgtggctgggtccctcaagtcaccagttcccagatcggaatcagccgaa
tcggagagggatcacaaaagacgaaagctcgacagtcactcttctccgtcccactcctcg
tctgttaaggacaatagcaacgaacccaaggagtccacatccaagcaccacgccaactac
aattcagtttcccgttccaagagcagagagagagagatggagaagaaagattcagacaac
acacaaggccgatccaaagagaagaaggaagacaaggatcggaaagacaagaaaagagac
catgctgtcaatgaccgtgagacgagccaagagtccaaacgtaaaaaggatgagaatgga
acaaattccaccaaaaacagcaagagtgcgagtccttcctgtgactccccgctttcagct
gaaaaagagaagagtaaaagatccaaatcttccagtaaagaaaaggccgagtctgtgaaa
cctgagcgaacatcctctggaggcaaaaaggagtccagacacgacaaagagaaatctgaa
aagaaagagaagagggatagcagcggaggaaaggaagacaaaaagcatcataaatcctct
gacaagcacagataa
DBGET
integrated database retrieval system
