Sander lucioperca (pikeperch): 116065368
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Entry
116065368 CDS
T07345
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116065368
03036 Chromosome and associated proteins [BR:
sluc03036
]
116065368
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116065368
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116065368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
116065368
NCBI-ProteinID:
XP_031176702
Ensembl:
ENSSLUG00000012036
LinkDB
All DBs
Position
21:15298992..15337860
Genome browser
AA seq
1888 aa
AA seq
DB search
MAPIRDSVSHSPNQTGLEHPGLDSQYEPSPWSSGSPCSSDGNSNWGKVLVEGSTDKPNPP
SSTNSSVWPPSSSSFSCSSSSSSSGCGSGSDPELASECMDADSSSSIGSEKNLAAVTTVM
MMSANASSSVSSTASSPSSSMVTSAMIVSGSVNGDSNGNSRQVIGGGMGTISGANNGNNN
VTGSSHYSVAGSSSIGSNNMGNHNNKPINNGSVWGSNMIPTGGSTPCINVGLNPNTSNPN
ANHGAWSQNPSPVSQGQRPPQAQGMSSKLGIAPQQGPMLGWGGMAAPNSSMMEDTEVNNG
TASSNVLESSNSGNGGLQPTNLNTESNGPNNTIMMNTTTTTTNATMTSSPPNSTASPQLS
GDCSWGSIRGGNGGPLANGNPSSAPQHPQGELGGSGTFGTPWGATTYPGDKAPPNADTVN
SQNPALMQAGNPQISSTAAYKSNNNHNNTGAPRWDQGPANNPNQTQSNLSWGISSNQITG
SVGQTPGNGNQTTMGPPAGLTRPWGSSASSSSSSSSSSSTSNNKMSNGEWGTTTPSNNHS
DAGSHKGNSANNGWKSLEDDAMGMGGGGGGGGSHGLGSVTGGWGRTGGSEGSVESSGGRS
SSDRDGSQPKGGNRRKVVPAATILPAVLQADVDPRVLSNTGWGQTPIRQNTTWDVNSPAN
NRLQVPNRDERKQSSGGSGWGTATPAAPSQTSGGWGGGQGSSGPGTGGSGWGERPPSGWD
SKVPASGGGGQNAWNDGSSYKGSNNNSNTWSNNINKDDRSNTWTNVPKPHQGWGSNGGNG
SEGWGNGGDGARTGGNNHWGEPQKGASSVGWDSDSDRSGSGCWSEQSRTNTSSSNTWVGS
GGSNTPDQSTPNPGSNWGDTVHKPNPQSNSQGWGEPMKNNHGAQNWGEPNPKPSNEWGKG
PESNMSKGNPALNKPTGWLGGPMPTAGQKEEVATGWEEPSPESVRRRMEIDDGTAAWGDP
GKYSGGSVNMWNRTGQSDQEAIGPSTQHQSHPARSSMHPPPQPVQPHTQDKSSSSVWGET
YPQKKESSTWEPTPAPPVKVDNGTSAWGKPMEASTTWEEPSRDNRESGPGWGSQHKSAPG
PKPMETWGGEEAAMGNSWDQEEEVEIGMWSNSQQDNRSHDQNTWNYKHKGSNKITKPVNK
QDEPWMKPFINQFNSMNFSRDSPDDSMKTGAGMVQDKRMDMGSMGDYNGVMGKNPGSRHQ
LHKESAMDRSPYYDKLSVSPSAYNNPASDELSSSQSMSFPPSNSAQPIPCLDSGLSPAHS
SPGGARQNVNPMMGGSSVAQGRGGPQSQVPPQPNLRNQVPPPILPSQVPPSLLKYPGGNG
GLNPLFGPQQVAVLNQLSQLNQLSQLNQINQLQRLLLQQQQQQQQKAQSQRAMPVGRPTE
QTRPIGSSPSMMPLPRHLDPSLLKHAPPHKPYLDNYLSHNTPEMQKDAAALGSFNFPLSL
NSNLNVPLDMGGGCSGGGAVSYKEPPQSRLKKLWATDPLEQNSKTGAMSSGLRLEDSPFY
DFLSPGPSPLSPPGQSMGSVGDGWPPRANSPPPHGNTVTWPPEFRPGEPWKGYPNIDPET
DPYVTPGSVINNLSINTVRDTDHLRDRNNGPSSSLNTTMPSNSAWSSIRASSHSGSLTST
AQSTSARPNESKWSPGGGSVSNSSLAHELWKVPLPPKALSVAAPSRPPPGLTSQKPSAAP
SGWDSSALRLGGWGSSESRYTPGSSWSDSSSSGRTQWLVLKNLTPQIDGSTLRTLCMQHG
PLITFHLNLPHGNAVVCYSSKDEATKAQKSLHMCVLGNTTILAEFASEEEINRFFAQGQS
LATPSSGWQAIGSSQSRMDQSHPFPSRAPEPNQWNSSDLRSSSLWGGPNYSSSLWGNPSG
TEAGRISSPSPMSSFLPVDHLTGGGDSM
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattcgggattccgtcagccactcccctaatcaaacaggtctggagcatcct
ggcttagactcccagtatgagccttccccctggtcctctggctctccctgcagcagtgac
ggcaacagtaactggggcaaagtcctagtagaaggaagcaccgacaaacccaacccccct
tcttcaactaactcttctgtctggcctccctcctcttcttcattctcttgctcctcgtct
tcttcctcttctggctgtgggtcaggatcagaccctgagttggcatcagaatgcatggac
gcagactctagctcctcaatcggctcagagaagaacctcgccgctgtgacaacagtgatg
atgatgtcagcaaatgcttcttcctctgtgtcttctacagcttcttctccctcctcctct
atggtgacttctgccatgattgtcagcggttcagtgaatggagacagcaacggtaacagt
cgtcaggtaattggtggagggatgggaaccatcagcggtgcaaataatggaaataataac
gtcaccgggtcctcccactactccgtggctggttccagcagtattggcagcaataacatg
ggtaaccataacaacaagcccatcaataacggtagtgtatggggcagcaacatgatcccc
accggtggaagcaccccctgcatcaatgtagggttaaacccaaacacttcaaacccaaat
gccaaccatggtgcctggtcgcagaatccaagcccagtgtcccagggccaacggcctcca
caggctcaggggatgagttccaaactgggtatagctccccaacagggccccatgctgggc
tggggtggcatggcagctccaaacagcagtatgatggaagacactgaggtgaataatggt
acagcaagcagcaatgtgttagaaagcagcaacagtggaaatggtggcctacaacctacc
aaccttaacactgaatccaatggaccaaataacactattatgatgaatactactactact
actactaacgccacaatgacctctagtccaccaaactctaccgcctcaccccaactcagc
ggggattgttcctggggctctattagaggagggaatgggggtccgctggccaatggaaac
ccctcatcagccccccagcacccccaaggagagctggggggttctgggaccttcggtacg
ccttggggcgcaactacctaccctggagataaggcccccccgaatgcagacactgtgaac
tctcaaaaccctgccttaatgcaggcagggaacccccaaatctcctctactgctgcttac
aagagtaataataaccacaataacactggggccccacgctgggaccaggggcccgccaat
aacccaaaccagactcagagcaacttgtcttggggtatcagctcaaatcaaatcacaggc
tctgtaggccaaacaccaggaaatgggaaccaaactacgatgggccctccagcagggtta
actcgcccctgggggagcagcgcgtcgtcttcttcctcgtcctcatcgtcctcttccaca
tctaacaacaagatgtcaaatggagaatggggaacaacaactcctagtaacaaccattca
gatgctggaagtcataaaggaaactctgccaacaatggctggaagagcctggaggatgac
gccatgggcatgggaggtggagggggaggaggtggaagccatggcttggggagtgtcact
ggaggctggggtcgcactggaggaagtgagggaagcgtagagagctccggaggccgatcc
agctcagacagagacggcagccagccaaaagggggaaatcgtagaaaagtcgtccctgct
gcaaccatactaccagctgtgttgcaggccgatgtggacccgagggttctgtccaacact
ggatggggacagacacccatacggcagaacaccacctgggatgtcaattcccctgctaac
aatcggcttcaggttcccaatagagacgaaagaaagcaaagcagcggaggctccggatgg
ggcacagcaacaccggcagctccctcccagacctctggaggttgggggggtgggcagggc
agctcaggcccaggtacaggaggttctggctggggagagcggccaccctctgggtgggac
agcaaagtcccagcgagcggaggaggtgggcaaaatgcctggaacgatggatccagctac
aaggggagcaacaacaacagcaacacctggagcaataacattaacaaagatgacaggtcc
aatacgtggactaatgtgcccaaaccgcatcagggctggggttccaatggtggaaatgga
agtgaaggctggggtaatggtggagatggtgccagaacagggggcaacaaccactggggg
gagccccaaaaaggtgccagctcagtgggctgggacagcgacagcgaccggtcaggctct
ggatgttggagtgagcaaagccgaaccaacaccagcagcagcaacacctgggtagggagc
ggaggatcaaatactccagaccagagcactccgaacccaggctccaactggggcgacaca
gtccacaaacccaatcctcagagtaacagccagggctggggtgagccaatgaagaacaac
cacggagcccagaactggggcgagccgaatcccaagccctccaacgagtggggaaaaggt
ccagaatctaacatgtccaaaggcaatccagcccttaacaagcccacaggctggctggga
ggccccatgcccactgcaggtcagaaagaggaagtagcaactgggtgggaagagccttct
ccagagtctgttcgacggaggatggagatcgatgatgggacagcagcttggggagatcct
ggtaaatacagcggtggatctgtcaacatgtggaacaggactggccaatcagaccaggag
gccataggcccatccactcagcaccagtcccacccagcacgcagctcgatgcatccccct
cctcagcctgtgcagcctcatacacaggacaaaagcagcagttctgtttggggtgagact
tacccccagaagaaggagtcctcaacctgggaacctacccccgccccacctgtgaaagtg
gacaacgggacgtctgcctgggggaagcccatggaagccagcaccacctgggaagaaccc
agcagggataacagagagtctgggcctggatggggcagccagcacaagtctgctccaggt
cccaagcccatggagacatggggtggtgaggaggcggccatgggcaatagctgggaccag
gaagaagaggtggagattggcatgtggagcaacagccaacaggacaacaggtcccacgac
caaaacacctggaactacaaacataaaggctccaacaagataaccaaaccagtcaacaaa
caggatgaaccctggatgaaacccttcatcaaccagttcaacagcatgaacttctctcga
gactctcctgacgactccatgaagacaggagcagggatggtgcaggacaagcgtatggac
atgggcagtatgggagactataatggagtaatgggcaagaacccaggctctcgacaccag
cttcacaaggagtctgccatggatcgcagcccttactatgacaagctgtcagtttccccc
tctgcttacaataacccagcttctgatgagctctcctccagtcaaagcatgagctttccc
ccttccaattccgctcagcctatcccctgtctcgactctgggctgtctcctgcccactct
agtcctgggggcgctcgacagaatgtaaaccctatgatgggcggcagcagtgtagcacag
ggccgaggcggcccccagtcccaggtccccccccaacccaacctccgtaaccaagtgcct
ccacccattctgccctctcaggtgcctccatccctgttgaagtacccaggaggtaacgga
ggtctgaaccctctgtttggccctcagcaggtggctgtactcaaccaactctcccagctc
aaccagctgtcacagcttaaccagatcaaccagttacagcgtcttctcctccagcagcag
cagcaacaacagcagaaggctcagagccagagagccatgcctgtgggacgaccgactgaa
cagacacgtcctattggttcgtctccatcaatgatgccgctgccacggcacctggacccc
tccctgctgaaacatgccccaccccacaaaccgtacctggacaactacttgtcccacaat
acccctgagatgcagaaggatgctgctgctctcggatccttcaacttccctttaagcttg
aactctaacctgaatgtacccctggacatgggtggtggttgtagtggtggcggagctgtg
agctacaaagagccgccccagtccagactgaaaaaactttgggctactgaccctctggag
cagaacagcaaaactggtgctatgtcgtctgggctgcgtctggaagactctcccttctat
gacttcctctctcctggcccatctcccctgagtccccccggccaatcaatgggctcggtg
ggtgatggctggccgccccgtgccaactcccccccgccccatggaaacactgtcacctgg
cccccagagttccggcccggggagccttggaaaggttaccccaacattgaccctgagact
gacccttatgtgacccccggcagtgtcatcaacaacctctccatcaacaccgtccgtgac
acagaccacctcagggacaggaacaacgggccatcctcatcactaaacaccacgatgcct
tctaacagtgcctggtcatccattcgtgcctccagccacagcggttccctcaccagtaca
gcacaaagcacttcagccagacccaatgagtcaaagtggtctcctggcggcggttctgtg
tccaactcctccctggcccatgagctgtggaaggtccccctgcctcccaaggcgctgtct
gtggcagccccatccagaccaccacctggcctcaccagccagaagcccagtgctgcccca
tccggttgggacagctctgccctcaggctgggggggtggggctcctctgaatccagatac
acacctggttccagttggagtgacagcagcagctcagggagaacccaatggcttgttctg
aaaaatctcacacctcagattgacggctctaccctgaggaccttgtgcatgcagcacggc
cctctgatcacattccacctcaacctgccacacggtaacgccgtggtatgctacagctcc
aaggatgaggccacgaaggcccagaagagcctgcacatgtgtgttttggggaacactact
attctggctgagtttgccagcgaggaggaaatcaatcgtttctttgcacaaggacagtca
ttggccactccctcctctggctggcaggccattggctcctctcagagcagaatggatcag
tctcacccctttcccagccgcgctcctgaacctaaccagtggaacagcagcgatctccgc
agctcctcactctggggtgggcccaactattccagtagcctgtgggggaaccccagtggc
accgaggcgggaaggatcagcagcccttctccaatgagctccttcctcccggtggatcac
ctgacagggggtggggactccatgtga
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integrated database retrieval system
