Sander lucioperca (pikeperch): 116065371
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Entry
116065371 CDS
T07345
Symbol
ciita
Name
(RefSeq) uncharacterized protein ciita isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sluc01001
]
116065371 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sluc04054
]
116065371 (ciita)
Enzymes [BR:
sluc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
116065371 (ciita)
Protein kinases [BR:
sluc01001
]
Serine/threonine kinases: Other
TAF1 family
116065371 (ciita)
Pattern recognition receptors [BR:
sluc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
116065371 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
AAA_16
NPHP3_N
nSTAND3
nSTAND_NTPase5
AAA_22
LRR_8
NB-ARC
SRP54
Motif
Other DBs
NCBI-GeneID:
116065371
NCBI-ProteinID:
XP_031176708
LinkDB
All DBs
Position
21:14978003..15001458
Genome browser
AA seq
1668 aa
AA seq
DB search
MPQFEEVLAGVRLALTWASPAEIRALLEGLVTEQIISEAYSKSLSRHEFTEGIAPTACKP
GSDRRNSRGSTTHWNLNQDQLSQVRNCRSSESTESDHNQITSESVSPVDEHDSTRSRSKN
HPLYEYHVIHENNLKLIQELRGGPVMDKHFLNHRLSFTPRACDYQCGLGLDDEMTELLNS
AELMQKQESDNERIDEGNLEYKKEWLEKVEEAARRIAVPLWQHWDRGRRMLLPLVPGMTA
RCGTSKTKVTDSEAHCPVLNMEEETELTIACRTLDLYADKFKCTEAIADLNFTLDTEGAQ
KGLCLSTCDSVPTTGLNTDHFNISGAGRNASPVHACVATDTNNNIADRLEGDLDVCWVAD
RTTDTTEDLLCLMGGAQCGTDARLTEDIAHLFSHADHSLHSSTDHSMTLDNVENFSKAAC
STNTCSTDGKTDFYEYKEDEERMDSHWGAKMQHVDQDPFISPDLGVLPDDLSEYLNEDYV
FADPDALFDSPLLNYEEISTCCDLPMATELLCPDSQQQGQKNKITNNRSKRPRAPRSQRC
TDENTPSRPKRQRAAGRSKNKVAKPTVTQGTDTGSERSLAESVGLSPTQQILHIHPSIQF
ITIPDSPAYQVVQTLRLSPPVIGLPLPNTPATPRFILVPAASPPFQRQVPPLSPMGGAVA
PVQMSSSPPGSLSDTASKAMSHPCASPLSPSNEMSTCKESPLPPSPTVLDIPPVVKDYIQ
EAKAHMNQSCQDMGSDLSLTSHYVNVQLSQREILRSGKNTNKDLDKELVIMGDTDRQKSL
LGQSHIFKGSNGDKPRRYIMLLGNAGMGKTTLIRKLCLDWSRDCIPQFDFVFFLDGKALS
LTEPTNSLQTLLLNLSSFAPVCMDPDAVYAQILAATKRVLIIFDGFGELRDYEILLQTLE
KDLISSLQKDSKAQTYTVRQLYSAILQRVLLPGCTLLLSTRPRGTASQLLRRTDSLLEVC
GFTPTDIEIYLSQYFTDPGLRASALDRLKNCSYLHLLCWNPGLCRLVCLVLEQCKGLEVL
PRTLTGLCHQVLRLKMEKDSRSTHSQAEAQSEISVESVEKTQTQISSRSQVTRGNKNTPT
KSRAQVHTRSRSQRARGSKKQENEEDDIDGEGMQSVVGEVDRTEERELLSQLSSLAWDGV
KANSSILPTGRTVSAKLKAFGHRTGLFFSYHLRTRQVVSSGEREGGGREDREEMGAGEDG
EKRGNKGRMDTENADASDDHILLWANPFLQSYLAGLHLSLSRTVTDRAFLQTLPFQSGQK
GRRRPQREELELTQRFAVGLLFYNRTELQRLHSYTETAFRDMVAAKQALVTKHLEGLSHG
DLNPAQVLEACHYVYEVSSTHGDGSRNSGSTQLVAHLAANLPEVLTFHGVPLKPSDMFPV
QNILERGGTKGRQFCLDLENSGIQISGLRSLVGLNNINTFRACIADVITLWEQLEQSGEE
GLLQGMVSKFKIHPLKATQVCHIEHLAKLVNIHTHKKLSDSSSQSDSILAEGVPAVKELH
RLELALGPEKGPLVLPKLWELLPGLHNLQHLDLENSKIGDKGAEKLADALVSLGSLEILN
LSQNCIGDQGVTKLATTLRALPKLHCLSLYSNVISDEGAESLADVLPHMASLTNLDVKYN
KLTDVGAQSLGASLKNCKKMKTLRMWNQCIPYGVFERLQQHDNRILLQ
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atgccccagttcgaggaagttctggccggagtgcggctggctctgacctgggcctctcct
gctgagatccgagctctgctggagggcttggtgacggagcagatcatctcagaggcctat
agcaagagcttgagtcgccacgaatttactgaggggattgcgcctacagcatgtaaacca
ggatctgatcggagaaattctagaggatctaccacccactggaacctcaaccaagatcaa
ctcagccaggtgagaaactgtcggtcatcagagtctacagaatctgaccacaaccagatc
acatcggagtctgtgtcgccagtggatgagcatgacagcacaaggtccaggtcaaaaaat
catccactctatgaatatcacgttattcacgagaataatctgaaactaattcaggaattg
agggggggaccagtgatggacaaacactttcttaatcacaggctttcttttacaccgaga
gcatgtgactaccaatgtgggctcggattagatgatgaaatgacagaactgctgaatagt
gcagaattaatgcagaagcaagaaagtgataatgaaagaatagatgaggggaatttggaa
tataagaaggagtggttagagaaggtagaggaggcagctcgaaggatagcagtccctctg
tggcagcactgggatagaggacgaaggatgttgctgcccctagttcctggtatgactgct
cgctgtggaacaagtaaaaccaaagtgacagacagtgaagcacactgccctgttttaaat
atggaagaggaaacggagcttacaattgcttgcaggacattagatttgtacgctgacaaa
tttaagtgtacagaggcgattgcagacctgaacttcacactggatacagaaggagcacaa
aaaggcctctgtttatctacgtgcgacagtgtgccaacaactggactgaacacggatcat
ttcaatatttctggagcaggaagaaatgcctcacctgttcatgcctgtgtagctacagac
acaaacaacaacatcgcagacaggctggaaggcgatctggatgtctgctgggtagctgac
aggacaacagacacaacagaagacctgctctgtttgatgggaggtgcacaatgtggcaca
gatgcaagattgacagaagacattgcacatttattttctcacgcagatcactcgttacac
tccagcacagatcacagcatgacattagacaatgtagaaaatttttccaaggctgcttgt
agtacaaacacgtgcagcactgatggaaaaacagacttttatgagtataaagaagatgag
gagaggatggattcacactggggtgccaagatgcagcacgtggatcaggacccatttatc
tctcctgacttgggagttctaccagatgatttatcggaatacttaaatgaagattacgtt
tttgcagacccagatgcgctctttgacagtccattgctgaattatgaggaaatcagcacc
tgctgtgatcttcccatggcaacagagctgctctgcccagacagccagcagcagggacag
aagaacaaaataacaaataacaggagcaaaagacccagagctccccgatcacaacggtgc
actgatgagaacacaccatctaggccaaaaaggcaaagagccgcaggacgatcaaaaaac
aaagtggctaagccaactgtcactcaaggcactgacacaggatcagagaggagtttagca
gagtcggtgggcctctcccccactcaacaaatccttcatatccatccctccattcagttt
atcaccatcccagactctccagcgtatcaggtggttcagacactgaggctctctcctcca
gttattggacttccactccccaacacacctgctacacctagattcatattagttcctgct
gcttcaccacccttccaacgccaagtgccacccctctccccgatgggcggtgcagtagcg
ccagtccaaatgagttcatccccaccaggatctctgtcagacaccgctagcaaagccatg
tctcacccatgtgcctcacccctctcccccagcaatgaaatgtctacatgtaaggaatcc
cctcttcctccgtctcccactgtccttgatattccacctgttgtaaaggactacattcag
gaagccaaagcacacatgaatcaaagctgccaggatatggggtcagaccttagcctgact
tctcattatgtgaatgtgcaactgagccagagagagattcttcgctctggaaaaaacaca
aacaaagacctggacaaggagctagtcatcatgggagatacagatcgtcaaaaaagtttg
ttggggcagagtcatatctttaaaggctcaaacggcgacaaacccagacgctacataatg
ctactcggcaatgctggcatgggaaaaaccaccctgatcaggaaactgtgtcttgactgg
tccagagactgcatcccacagtttgactttgtcttctttttagacggcaaagcactctct
ttaacggagccgaccaatagccttcagaccctcctattaaacctttcctcctttgcccct
gtctgcatggaccccgacgcagtgtacgctcaaatccttgcagccactaagcgtgtgctc
atcatttttgatgggtttggcgagttacgggactatgaaattcttctccagactctagaa
aaagacttgatatcttcattgcagaaagacagtaaagcacagacctacacagtaagacag
ttatactctgccatccttcagagggtcctccttccaggctgcactcttctgctctcaaca
cgaccaagaggcactgccagccagctactccggcggacggacagccttttggaggtttgt
ggcttcacccccacagacatagagatatatttgtcccagtacttcactgaccctggcctc
agagcatctgctttggaccgcttaaaaaactgcagctatctacatctcctctgctggaac
cctggactgtgtcggttggtctgcttggttttagaacaatgcaaaggtttagaggtccta
ccgagaaccttaaccgggctctgccatcaagtgcttcgtctgaaaatggaaaaggacagt
aggagcacacactcgcaggctgaagctcaatcagaaatatctgtggaatcagtagaaaaa
acccagacacaaatctcaagtaggtctcaagttacgaggggtaacaaaaacaccccgacg
aagtccagagcacaggttcacactcgctctcgcagccaaagagcgagggggtcaaaaaaa
caggagaacgaggaagatgacattgatggagaggggatgcagagtgttgtcggggaagta
gatagaacagaggagagagagttgctgtcccagctgagttctttggcttgggatggggtc
aaagcaaactcctccatcctccccacaggacggactgtatctgccaaacttaaggcgttc
ggccacaggacagggctcttcttctcttaccatctgaggacgaggcaggttgtctcaagt
ggcgagagagagggaggaggaagagaggacagagaagaaatgggagcaggagaggatgga
gaaaagaggggaaacaaggggaggatggacactgaaaacgccgatgccagtgatgaccac
atcctgttgtgggccaacccttttcttcagagttacctggcagggctccatttgtctctg
tcaaggactgtaacagaccgtgctttccttcagaccctccctttccagtcaggccagaag
ggacgtcggcgaccacaaagggaagagctcgagctcactcagcgatttgccgttgggctt
ctgttctacaacaggacagagctgcagaggcttcactcatacacagagacagccttcaga
gatatggtggccgccaagcaggctttagtaacaaaacaccttgagggtctttcccatggt
gacctgaaccccgcccaggttctggaggcatgtcactatgtttatgaagttagttccaca
catggtgatggtagcagaaacagtggcagcacgcaattagtcgctcacctggcagcaaat
ctcccagaagtcctgacatttcatggagttccactcaagccatcggacatgttcccagtg
cagaacatacttgaaaggggtggaactaaaggtagacagttctgtttggatctggagaat
tctgggatacagatttcgggactcagatctctggtggggctcaacaacatcaacaccttc
agggcatgcattgctgatgtcatcaccttatgggagcagttagagcagagtggcgaagaa
gggctcctacaagggatggtgtccaaattcaagatccaccctctgaaggccacacaggtg
tgtcacatagagcacttggcaaagctggtgaacatacatacgcacaagaagctgtcggac
agttccagccaatcagattccatcctggccgagggagtaccagctgtcaaagagctacac
aggctggagcttgcacttggtccagagaaaggtcccctggttcttcccaagctgtgggag
ctcctgccaggtctacataacctacagcacttagatctagagaacagtaagataggggac
aaaggggcagagaaattggctgatgctttagtctcacttggttccctggagatactcaat
ctgtcacagaattgtataggagaccagggggtgacaaaactggcaaccacgttgagggcc
ctgcccaaactgcactgtttaagtctctacagtaacgtgatttctgatgaaggggcggag
agtttagcagatgtcctgccacacatggcttcgctcactaacctggatgtgaagtacaac
aagctaacagatgttggagctcagagcctgggagccagtctgaaaaactgtaaaaaaatg
aagaccttgaggatgtggaaccagtgtattccatacggagtgtttgagagacttcagcag
cacgacaaccggatccttttgcagtag
DBGET
integrated database retrieval system
