Sander lucioperca (pikeperch): 116065449
Help
Entry
116065449 CDS
T07345
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116065449 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116065449 (ddx5)
03009 Ribosome biogenesis [BR:
sluc03009
]
116065449 (ddx5)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116065449 (ddx5)
Spliceosome [BR:
sluc03041
]
Complex A
U1 snRNP components
U1 related factors
116065449 (ddx5)
Complex B
116065449 (ddx5)
Ribosome biogenesis [BR:
sluc03009
]
Eukaryotic type
Pre-60S particles
Helicases
116065449 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116065449
NCBI-ProteinID:
XP_031176838
Ensembl:
ENSSLUG00000006320
LinkDB
All DBs
Position
21:28258236..28264202
Genome browser
AA seq
622 aa
AA seq
DB search
MPGYSDRDRGRDRDRDRGYGGGPPRFGGNRGGGGGGGGGKFGNPGERLRKKQWNLDELPK
FEKNFYQEHPDVTRRSPQEVEMYRRTKTITVKGRSCPNPIAKFHEASFPSYVMDVINKQN
WTEPTPIQAQGWPLALSGQDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL
APTRELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE
AGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF
LKEYVQINIGALQLSANHNILQIVDVCNDAEKENKLIRLLEEIMSEKENKTIIFVETKRR
CDDLTRRMRRDGWPGMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFV
INFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLIAVLREANQAINPKLLQ
MAEDRGGRSRGGRGGDYRDDRRDRYSGRRDFGSFRDRDNGRGFDNGPSKTYGTNSQNGGY
GGNNSSGNGLSGASYNGNGQSNFNSQPGAFGGQNFQAQQFALAKGGAPSGAGHPPFPFPQ
AQAPQHHPPPLVPYPMPPQFSQ
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgacagagaccgcggcagagacagagatagagacagaggatatggc
ggcggtcctcctcgctttggtggtaaccgtggtggtggcggcggaggtggaggaggaaag
ttcggcaatccaggtgagaggctgcggaagaaacaatggaacctggatgagcttccaaag
tttgagaaaaacttctaccaggagcatcccgatgttacccggaggtctccgcaagaagtt
gaaatgtacagaagaactaaaacaattacagttaaagggagaagctgtccaaatcctatt
gccaagttccatgaggccagcttcccatcttatgtgatggatgtgatcaacaaacagaac
tggactgaaccaacacccatccaggctcaaggctggcctctggctctcagtggccaggat
atggtcggcattgcacagactggctctggcaagacactttcctatttgttgcctgcaatt
gtgcacatcaaccaccagcctttcctggagcgtggagatggtcctatatgcttggtgcta
gccccgacccgtgaactggcgcagcaggtgcaacaggtggctgcagagtatggccgagca
tctcgcctgaagaccacctgtatatacggaggagcacccaagggaccccagatccgtgac
ctggaaagaggtgtcgagatctgcatcgccactccaggaaggctaattgacttccttgag
gctggaaagacaaacctccgtcggtgcacttatcttgtcctggatgaggctgacagaatg
ctggacatgggctttgagccacagatccgaaaaattgttgaccaaatcaggcctgaccgt
cagactctgatgtggagtgccacttggcccaaagaggttcgccagctggctgaggacttc
ctaaaggagtacgtccagatcaatattggggccctccagctcagtgccaaccacaacatc
ctgcaaatcgtggatgtctgcaacgatgcagagaaggagaacaaacttatccgtctgctt
gaagaaatcatgagtgagaaggagaataagaccatcatctttgtagagacaaagaggcgc
tgtgatgatctcaccaggaggatgagaagggatgggtggccaggtatgggaatccatgga
gataaaagccagcaggaaagagactgggttctcaatgagttcaaatatggaaaggctccg
attctcattgcaaccgatgttgcttccagaggtctagatgtggaagatgtgaaatttgtc
atcaactttgactaccccaacaactctgaggactatatccaccgcattggcagaacagct
cgtagccaaaagacaggcacagcttacaccttcttcactcccaacaacatgaggcaggcc
agtgacctcatcgctgtgctccgtgaggccaaccaggctatcaaccccaagctcctccaa
atggcggaagacagaggagggcgttcaaggggaggcagaggtggtgactacagagatgac
cgtcgggataggtattctggaaggcgtgattttggcagttttagggaccgggataatggt
agagggtttgacaacggaccaagtaaaacttatggcacaaattcacagaatggaggctat
gggggcaataacagcagtggcaatggcttgagcggagccagctacaatggtaatggacag
tccaactttaacagccaacctggagccttcggaggccagaacttccaggcccaacagttt
gctcttgctaagggtggcgcgccaagtggcgctggtcaccccccattccccttcccccag
gcacaggctccgcagcaccatcctccaccgctggtgccataccccatgcctcctcagttc
tctcagtaa
DBGET
integrated database retrieval system
