Sander lucioperca (pikeperch): 116065485
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Entry
116065485 CDS
T07345
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116065485 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116065485 (smarca4a)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116065485 (smarca4a)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116065485 (smarca4a)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
116065485 (smarca4a)
Chromatin remodeling factors
BAF complex
116065485 (smarca4a)
PBAF complex
116065485 (smarca4a)
GBAF(ncBAF) complex
116065485 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
116065485
NCBI-ProteinID:
XP_031176896
Ensembl:
ENSSLUG00000017847
LinkDB
All DBs
Position
21:27311977..27350190
Genome browser
AA seq
1644 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGGMMGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQDNMHQMHKPMEAMHEKGMPDDPRYAQMKGMGMRPGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPMIPGGPSGPGAGPMEGSGDPNQGMGQPNRGGPQGPGG
PGGAGGGPGGAGGPAPFNQNQLHQLRAQIMAYKMLARSQPLPEHLQMAVQGKRPMPGMQQ
QPMPNMPPSTGPGGGPVGGPGPAQANYNRPHGMVGPNMAPPGPAGVPPGMQGPPTNGPPK
SWPEGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPPPM
MLHQKQNRVTPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIE
LKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIE
QERKRRQKHQEYLNSILQHAKDFKEYHRSITAKLQKATKAVATYHANTEREQKKENERIE
KERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKEKKKK
KKKKKPETMEGGAPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGMEAPKAGQLETWL
EMNPGYEVAPRSDSEESGSEEEEEEEEEEEEQPHSSATQAEEKKKIPDPDSEEVSEVDVM
HIIEHAKQDVDDEYGNASFNRGLQSYYAVAHAVTEKVDKQSTLLINGQLKQYQIKGLEWL
VSLYNNNLNGILADEMGLGKTIQTIALITYLMEYKRLNGPFLIIVPLSTLSNWVYEFDKW
APSVVKVSYKGSPAARRAFIPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHR
MKNHHCKLTQVLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCTTFEQWFNA
PFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQR
VLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGY
SGGIVSGPDLYRSSGKFELLDRILPKLRATDHKVLLFCQMTSLMTIMEDYFAYRNFKYLR
LDGTTKAEDRGMLLKTFNDPASQYFVFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ
AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGCERRA
FLQAILEHEEQDEVGARGGCRTRGAWEEDEVPDDETVNQMIARSEEEFEQFMRMDLDRRR
EDARNPKRKPRLMEEDDMPSWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTE
KQWLKAIEEGNLEDIEEEVRHKKTTRKRKRDRDHDGGPATPSSSSGRGRDKDEEVKKAKK
RGRPPAEKLSPNPLSLTKKMKKIVDAVIKYKDGSNGRQLSEVFIQLPSRKELPEYYELIR
KPVDFRKIKERIRSHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQ
KIEKEDESEGEESEEEDDDLDEGSESESRSVKVKIKLSRKEKGERGGKGQRRRGRGARAK
PVVSDDDSEEEQEEERSASGSEED
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcctgaccccccgatgggagggacacctcggcctggaccctccccaggcccg
gggccatctccgggaggcatgatgggcccgagccctggtccctctccaggctcagcccac
agcatgatggggccgagcccgggccctcctggatctggacacccccaccctccacaggga
ccctcaggatatcctcaggacaacatgcaccaaatgcacaaacccatggaagccatgcat
gagaagggaatgcccgacgacccccgctatgcccagatgaagggcatgggcatgagacca
gggggacacagtgggatgggaccccctccgagccccatggaccaacattcccaaggttat
ccctctccgttgggaggctcagagcacgcacccagccctgtcccagccaacggccctccc
tctggccccatgatccccggaggtccctccggccccggggctggccctatggagggcagc
ggggaccctaaccaggggatgggtcaacctaaccgcgggggaccccagggtccgggcgga
ccgggtggtgcgggcggtggacccggcggtgcaggcggacctgctccgttcaaccagaac
cagttgcaccaactcagggctcagattatggcctacaagatgctggcccgcagccagccc
ttacccgagcacctgcagatggccgtgcaggggaagaggcccatgcccgggatgcagcag
cagccgatgcccaacatgccgccttctacggggcccggagggggccctgtgggtgggccg
ggaccagctcaggccaactacaacagaccacacggcatggtaggtcctaatatggcgcct
cctggacctgcaggagttcccccaggtatgcaaggcccgcctaccaacggaccccctaaa
tcatggcctgaagggccgatggtgaatgctgcggccccgtcaaaccctccccagaagctg
atcccacctcagcccacgggcagaccctcgcccgctcctccctctgttccccctgccgcc
tccccagtaatgccccctcagacgcagtccccgggacagcctgcccagccccctcccatg
atgcttcaccagaagcagaaccgcgtaacccccatccaaaagccccgcgggctggaccca
gtggagatcctccaggagagggagtacaggctacaggcgcgtattgctcaccgtatccag
gagctggagaacctgccgggctctctggccggtgacctgcgcaccaaggccaccatcgag
ctgaaggccctgaggctgcttaacttccagagacagctgcgtcaggaggtggttgtttgc
atgcgacgtgacactgctttggaaacggccctcaacgccaaggcctacaagcgcagcaaa
cggcagtctctacgcgaagcccgcatcaccgagaagctggagaaacagcagaagattgaa
caggaacgtaaacgtcgtcagaaacaccaggaatacctcaacagcatcctgcagcacgcc
aaggatttcaaggagtaccatcgctccatcacggcgaagctccagaaggccaccaaggcc
gtcgccacctatcacgccaacaccgagcgcgagcagaagaaagagaacgagcgcattgaa
aaggagagaatgcggaggctgatggctgaagatgaagaaggctaccgtaaactcatcgac
caaaagaaagacaagcgcctggcctacctgctgcagcagacggacgagtacgtggccaac
ctcactgagctggtgcgtgcgcacaaagccgtgcaagctctcaaagagaagaaaaagaag
aagaaaaagaagaagccagagactatggagggtggcgctcccgccctgggacctgatgga
gagcctttggatgagaccagtcaaatgagcgacctaccggtgaaggtgatccacgtggac
agtggaaagatcctgactgggatggaagcacctaaggctggccagctggagacctggctc
gaaatgaacccaggatacgaagtagcgccgcgttcagacagtgaggaaagcggttcagaa
gaagaggaggaggaggaggaagaggaagaggagcaacctcattcctctgcaactcaagca
gaggagaagaagaagattcctgaccccgacagtgaagaagtatctgaagtcgacgtcatg
cacatcatcgaacacgccaagcaggatgtagatgatgagtacggtaatgcaagtttcaac
cgaggcctgcagtcctactacgccgtggctcacgctgtcactgagaaagtggacaagcag
tccacgctgctaatcaacgggcagctcaagcaataccagatcaaaggtttggagtggctg
gtgtcgctttacaacaacaacttgaatggcatcctggctgatgagatgggtctggggaaa
accatccagaccatcgccctcatcacttacctcatggagtacaagcgcctcaacgggccc
ttcctcatcatcgtacctctctcaactctatcaaactgggtctatgagtttgataagtgg
gccccatcggtcgtgaaagtctcctacaaggggtctccagctgctcgccgtgcattcatt
cccatcttgcgcagcggcaagttcaacgtgctgctcaccacatacgaatacattatcaaa
gataagcaggtgctagcaaagcttcgttggaagtacatgattgtggacgaaggccaccgt
atgaagaaccaccactgtaaactgacccaggtcttgaacactcactacttggccccgcgc
cgcctgctgctcacaggcactccactgcagaacaagctgcccgagctctgggccctgctt
aacttcctcctgcccaccatcttcaagagctgcaccacgttcgaacagtggttcaacgcc
cccttcgccatgactggagagaaggttgacctgaatgaagaagagaccatcctgatcatc
cgacgtttacacaaagtgctcaggcctttcctgctgcgccgactcaagaaggaagtggag
gcccagctgcccgagaaggtggagtatgtgataaagtgcgatatgtcagccctacagagg
gttttgtaccgacacatgcaggccaagggagtcttgctcacagatggatcagaaaaagac
aagaagggtaaaggtggcacgaagaccctgatgaacactatcatgcaactgagaaagatc
tgcaaccacccctacatgttccagcacattgaggagtctttctctgagcatcttggctat
tctggtggaatcgtgagtggcccggacctgtaccgctcctctgggaagtttgagctgctg
gatcgcatcctgcccaagctgagggccaccgaccacaaagtgctgctcttctgtcaaatg
acctctctcatgaccatcatggaggactactttgcctaccgtaacttcaagtacctgcgt
ctggacggaaccaccaaggcagaggaccgcggcatgctgctaaagacattcaacgacccg
gcctcgcagtactttgtgttcctgctcagcaccagggctggaggcctgggcctcaacctg
cagtcggccgacaccgtcatcatctttgacagcgactggaacccacatcaggacctgcag
gcccaggaccgcgcccaccgcatcggtcagcagaacgaggtgcgcgtgctgcgcctctgc
accgtcaacagcgtggaggagaagatcctggcggcagccaagtacaaactgaacgtggac
cagaaggtcatccaggcgggcatgttcgaccagaagtcgtccggctgcgagcgtcgggcc
ttcttgcaggccatcctggagcacgaggaacaggacgaggtcggggctcgaggaggctgt
cgtactaggggggcgtgggaggaagacgaagtgcccgatgacgagacggtcaatcagatg
atagccagaagtgaagaggagtttgaacagttcatgcgcatggatctggacagacgccgc
gaggacgcccgcaaccctaagaggaaaccgcgtctgatggaggaggacgacatgcccagc
tggattctgaaagacgacgccgaggtcgagaggctaacttgcgaagaggaggaggagaag
atgtttggccgcggatcgcgccaacgcaaggaagtggactacagcgactcgctcactgag
aaacagtggctcaaggccatagaggagggaaatctagaggacatcgaggaggaagtgcgt
cacaaaaagacgaccagaaagcgcaagagagaccgcgaccacgacggcgggccggccacg
cccagctccagcagcggccgcgggcgggacaaggacgaggaggtgaagaaggcgaagaaa
cgcggccgcccgcccgccgagaagctctctcccaaccctctgtccctcactaagaagatg
aagaagatcgtcgacgctgtcatcaaatataaggacggtagtaacgggcgacagctgagc
gaggtcttcatccagctgccctctcgcaaggagctgcccgagtactacgagctcatccgc
aaaccagtggacttcagaaagatcaaggagaggatccgcagccataagtaccgcagcctg
aacgacctggagaaagacgtgatgctgctgtgtcaaaacgcccagaccttcaacctggag
gggtctctgatctatgaggactccattgtgctgcagtctgtcttcaccagcgtgaggcag
aagatcgagaaggaggacgagagtgaaggggaggaaagtgaggaagaggacgacgacctg
gacgaaggctcggagtctgaatctcgctcggtgaaggtgaagatcaagctgagccggaaa
gaaaagggggagcgaggagggaaaggacagcggcggaggggccgcggtgcccgggccaaa
ccggtggtgagcgacgacgacagcgaggaggaacaggaagaggagcgttcggccagtggc
agcgaggaggactga
DBGET
integrated database retrieval system
