Sander lucioperca (pikeperch): 116065803
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Entry
116065803 CDS
T07345
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sluc03036
]
116065803 (dicer1)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
116065803 (dicer1)
microRNA pathway
RISC loading complex
116065803 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
DSRM_2
dsrm
Motif
Other DBs
NCBI-GeneID:
116065803
NCBI-ProteinID:
XP_031177300
Ensembl:
ENSSLUG00000021548
UniProt:
A0A8D0DCM5
LinkDB
All DBs
Position
18:complement(29025830..29076218)
Genome browser
AA seq
1908 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGHYQENAKRTVFLVNTAVSVVQQAAAVRTHSDLQVGEYTDLEET
SAWTDQRWSREIIENQVLVMTCHIFLHVLRKKILPLSKINLVVFDDCHLAITDHPYCEIM
KLFEGCSCSPRILGLTASILNGKCDPSELEHKIQNLESILKSNAETATDLVVLDRYASQP
REVVLDCGPYVDKSGLSSSLQVELDEALHFLNDCNVSFAREDRDPTYISKQVLSDCRAVL
QVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKVHALCEEHFSPAALDL
KFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTKTFEEDLTTYKAIEKILRNKCSKSVEVSEFEVEQVLDDDNV
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTAERQDDRFQSTLYLP
INSPLRVPIKGPMMNCARLAEKAVALVCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLRDSYAVPEQTYYLYVVGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFALTTAQLDLITRLH
QYIFSHILRLEKPALEFKPTLADSAYCVLPLNVVGDSSTLDMDFGFMEDIEKSEARTGIP
TTQYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATEAGVGAQTLPPDFR
YPNLDFGWKRSIDSKTFISCPDSCSEDGEGDCERQETLTPDSDSLTHPSSHHSSLPERGA
LVALEPGEATCTGNLTNGTALVTDCDDDGPQDEHLHRRDNCQRSQPSSPGLPSPESIQTT
TSVPAQPSHSSKKPSSSPPQPSDECTPGRPSDHANKATSVCSRAATAPNAPTAPSPPDLD
AVPQHRAQTGDSPKSLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT
YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSST
DKLDSEEAREELLANGQSGNDSDEDDEEGEEVDDDSELMLKEEPKDEVNMEDDLEYYKEH
IKFIDNMLLGSGAFGKKISLSGFPPSLTPAAASSPAMESPYEWKAPKKPPHPTAAHYPAE
PAPSGPSAEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGAELGKQSISYDLHT
EQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPLERGALTGAVVQSCRITT
IDLCYGWLKIPPRCLLDHPDAERTLNHLISGFENFEKKINYTFQNKAYLLQAFTHASYHY
NTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDY
HKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFES
LAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTY
DGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN
NT seq
5727 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctacagcttgtcacccctgccacttcacccatggggcctttctttggtctg
ccatggcagcaggaggctatccatgataacatctacacacctaggaaatatcaggtagaa
cttcttgaagcagctcttgaacataatactatcgtctgcttgaatactggctcagggaag
acctttattgcagtacttctaacgaaagagctctcccaccaaatccgtggacattaccaa
gaaaatgcgaagaggactgtttttctggtgaacacagcagtgtctgtagttcagcaagca
gctgcagtcaggactcactcggacctccaagtgggagagtacacagatctggaggagacc
tcagcgtggacagaccagcggtggagtcgagagatcatcgagaatcaggtgctggtcatg
acttgccacatattcctgcacgttctgaggaagaaaatcttaccgttgtctaaaatcaac
ttggtggtttttgacgattgtcacctggccatcacagaccacccttactgtgagataatg
aagctgtttgagggctgctcatgcagtcctcgtatcctgggtctcacagcctccattctg
aatggaaagtgtgacccgtcagaactggagcacaagatccagaatctggagagcatcctg
aagagcaatgctgaaactgccaccgaccttgtggtcctggacagatacgcctctcagcca
agggaagtggtgctggactgcggcccctacgtggacaagagtggcctctcttcctctctg
caggtagagctggatgaagctctccacttcctgaatgactgcaacgtgtcttttgccaga
gaggaccgtgatcccacgtacatctccaaacaggtcctgagtgactgccgggccgtgctg
caggtcctgggaccctggtgtgcggacaaggccgccggcatcatggtgcgggaactccag
aagtacatcaaacacgagcaggaggagctcaaccgcaagtttctgctcttcaccgacacc
atcctgcgcaaagtgcacgccctgtgcgaggagcacttctcgcccgccgcgctggacctc
aagttcgtcacccccaaggtcctgcgtctgctcgagatcctgcacgagtacaagcccttt
gagcgccagcagtttgaaagcgtggagtggtacaacaaccgcaaccaggacaactacgtg
tcctggagcgactccgaggacgaggacgaggacgaggaggtggaggccaaagagaggccc
gaagccaactttccctcaccgttcaccaacatcctgtgtgggatcatctttgtggagagg
cgttacacagccgtcgtcctcaatcgtctgatcaaagaggcggggaagcaggacccagag
ctggcttacatcagcagcaacttcatcaccggccacagcatcggcaagaaccagccgcgg
aacaagcagatggaggtggagttcaggaaacaagaagaggttctccgcaaattccgggct
catgaaaccaacctgctgatcgccaccagcatcgtggaggaaggcgtggatatcccaaag
tgtaacctggtggtgcggtttgacctgcccacggagtacaggtcctacgtccagtccaaa
ggcagggcgcgagctcctgtctccaactacatcatgctagccgacagcgagaggaccaaa
accttcgaagaagatctcactacctacaaggccattgagaagatcttaaggaacaagtgc
tccaagtcggtggaggtgagtgagtttgaagtggagcaggtcctggacgatgacaacgtc
ctcccaccctacgtgcttcgatctgaggacggaggtccccgggtcaccatcaacacagcc
atcggacacattaacaggtattgtgcccggctgcccagtgacccgttcacccacctagca
cccaagtgtaaaactgcagagaggcaggatgaccgcttccagtcaacgctctacttgccc
atcaactcccctctgcgagttcctattaagggtcctatgatgaactgtgccagactggca
gagaaagctgttgcactagtatgctgtgagaaactccacaagataggtgagctggacgat
cacctgatgccggtgggaaaggagacggtgaagtatgaggaggagctggaccttcacgat
gaggaggagaccagcgtgccaggccggcccggctctaccaaacggaggcaatgctaccct
aaagccataccagagtgtctgcgggacagttacgctgtgccggagcagacgtactaccta
tatgtggttgggatggtcctcaccacccctctccctgatgaactcaacttccgcagaagg
aagctctacccaccggaggacaccaccaggtgcttcggcatcctgactgccaaacccata
cctcgaattccccatttcccggtgtacactcgctcgggtgaggtgaccatctccatcgag
ctgcagaagtcgggcttcgcgctcaccaccgcccagctggacctcatcacccgcctgcac
cagtacatcttctcccacatcctccgcctggagaaacctgcactggagttcaagcccacg
ctggctgactcggcttactgcgttctacctctgaatgttgttggggactccagcacgcta
gatatggactttgggttcatggaggacattgagaagtctgaggcccgcactggcattcct
accactcagtacaccaagcagaaccccttcaccttcaagctggaggactaccaggacgct
gtcatcattccaaggtatcgcaactttgaccagcctcatcgcttctacgttgccgatgtg
tacacagacctgaccccgcttagtaagtttccttcaccagagtacgagacatttgccgag
tactacaaaaccaagtacaacctggacctgtccaacctgaaccaaccgcttctggacgta
gaccacacctcctccagactcaacctgttgaccccgcggcacctgaaccagaagggcaaa
gccctgccgctcagcagcgcagagaagaggaaggccaagtgggagagtctgcagaacaag
cagatcctggttccagagctgtgtgccatccaccccatccctgcttccctgtggaggaaa
gcggtgtgcctgcccagcatcctctaccgcctccactgccttctgaccgccgaggagctc
agagcccagacagccactgaagctggagtgggagcccagacccttccccctgacttcagg
tatccgaacctggactttggctggaagagatccatcgacagcaaaacgttcatctcctgt
cccgactcgtgcagtgaggacggcgagggcgactgcgagcgccaagagactctcacccct
gactccgattccctcacgcatcccagtagtcaccactcttccctgcccgagcggggggcc
ctcgtggccctcgagcccggagaagccacatgcacggggaacctaaccaacggcactgcc
ctcgtcaccgactgtgacgacgacggcccccaagacgagcaccttcaccgacgtgacaat
tgccaacgctcccagcccagctcccctgggctgccgagtcccgaatcaatacaaaccact
acctcagttcctgcgcagccctctcacagctccaagaagcccagctccagtcctccacag
cctagcgatgaatgtacaccagggaggccctcagaccatgcaaataaagctacctcagtc
tgcagccgggcagccacggctcccaatgctcccacagcaccttctcctcccgatctggac
gctgtcccccagcacagagcccagacgggagactcccccaaaagcctagggcccaacccg
ggcctcatcctgcaggccttgaccctatccaacgccagcgacggtttcaacctggagcgg
ctggagatgctcggagactctttccttaagcatgccatcaccacatacctgttctgtacc
taccccgacgctcacgagggacgacttagctacatgcgcagcaagaaggtgagcaactgt
aacctgtaccggctcgggaagaagaaaggactccccagcaggatggtggtgtccatcttc
gacccccctgttaactggctgccccctggctacgtggtcaaccaggacaagagcagcaca
gacaaactggattcagaggaggccagagaggagcttttggccaacgggcagtctggaaac
gactctgatgaggatgacgaggagggtgaggaggtggatgacgacagtgagctaatgctg
aaggaagagccaaaggatgaagtcaacatggaggacgatctggagtattacaaggagcac
ataaagttcatagacaacatgttgttgggatccggtgcgtttggtaagaagatctccctg
agcggcttccctccctctctcaccccggccgcggcttcctcccccgccatggagtctcca
tacgagtggaaggcccccaagaagcccccccatcccaccgccgcccactaccccgcggag
ccggcgcccagcgggccctctgccgaggagtttgactacagctcgtgggacgccatgtgc
tacctggatcccagcaaggccggtgaggaggacgactttgtggtgggcttttggaatccg
tctgaggaaaactgcggcgcagagctcggcaagcagtcgatctcctacgacctgcacacg
gagcagtgcatcgctgacaagagcattgccgactgcgtggaggccctgctgggctgctac
ttgaccagctgtggagagagagcggcccagatgtttctctgctcgctgggcctcaaggtg
ttaccgttggagagaggggccctgacaggagcagtggtgcagagctgtcggatcaccacc
atcgacctgtgctacggctggctgaagatcccaccgcgctgcctgctggaccatccggac
gcagagcgaactctcaaccacctcatctctggcttcgagaactttgaaaaaaagatcaac
tacacatttcagaacaaggcttaccttctgcaagccttcacccacgcttcctaccattac
aacaccatcacagattgttaccagcggctggagttcctcggcgatgcaattctagactac
ctcataacaaagcacctttatgaagacccgcggcagcactctcccggcgtgctgaccgac
ctgcgctcggccctcgtcaacaacaccatctttgcctctctggctgtcaagtacgactac
cacaagtacttcaaggccatctcgcccgagcttttccacgtcatcgacgactttgtgcag
tttcagctggagaagaacgagatgcaaggcatggactccgaactgcggcgctctgaagaa
gatgaggagaaggaggaggacatcgaggtccctaaggccatgggggacatctttgagtcg
ctagccggagcaatttacatggacagcaggatgtcactggagacggtgtggcaagtgtat
tatcccatgatgaggccacttatagagaaattctctgccaatgtgccacgctctcctgtg
agggagctgctggagatggaaccagaaactgccaagttcagccctgcagagagaacgtac
gacgggaaggtccgggtgacggtggaggtcgtcggtaagggcaagttcaaaggagtcggc
cgcagctaccggatcgccaagtcggcggctgcgcggcgagctctgcgcagcctcaaagcc
aatcaacctcaggtccaaaacaactga
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integrated database retrieval system
