Sander lucioperca (pikeperch): 116066035
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Entry
116066035 CDS
T07345
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116066035 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116066035 (hbs1l)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116066035 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
116066035
NCBI-ProteinID:
XP_031177634
Ensembl:
ENSSLUG00000011244
UniProt:
A0A8D0D2U4
LinkDB
All DBs
Position
19:complement(18748701..18775434)
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AA seq
701 aa
AA seq
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MSRHRNVRGYNYDEDFDDDDIYGHSVDDDCCISPATANQFIYSRQERQAPKEGPLEEEEY
EDDVPMSPTISHNLDPLDQAKLYSCLDHMRTVLGDAVPDSILTQAAIKCGFDPQKALDAV
LSEDAKTAPGTRSTNEETASVARVNQEKAPLPQRTKQAAVAEKAKSRDVSHNKLDSEVVP
KVARMTVSGKKQTMGFDVPSTGENGVVTASVRRGGSPEDATATPASEATPKRPETPAKGS
NGDEPSTVPTPGRSSGKARQSINIKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYL
LGNVNKRTMHKYEQESKKAGKASFVYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTLM
DAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAV
AVNKMDQVNWQQERFQDIITKLGHFLKQAGFKESDVFYIPSSGLSGENLTTRSTVSQLTS
WYSGPSLLEQIDAFKAPQRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGERILAM
PPNETCTVKGITLHDEALDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIRVCTRFRA
RILLFNIEVPITKGFPVLLHYHTVSEPATIRKLISVLHKSSGEVLKKKPKCLSKGMNAIV
EIQTQRPVSLELYKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcacagaaatgttcgaggttacaactacgatgaagattttgacgatgatgac
atttatggacattctgtagatgacgactgctgtatatcaccagcaacagcaaatcagttt
atctactctcgtcaagagaggcaagcaccaaaagaggggcctttagaagaggaagaatat
gaagatgatgtacccatgtcccctaccatcagccacaaccttgaccctcttgaccaagcc
aagctgtattcctgtctggaccatatgcggactgttttgggagatgcagtgccagactca
atcctgacccaggcagccataaaatgtggattcgacccacagaaggcattggatgcagtc
ctgtctgaagacgctaagacagccccaggtaccagaagtaccaatgaagagacagcttcg
gtagcaagagttaaccaggagaaagcgccgcttccacaaagaaccaaacaagcggccgtg
gctgagaaagctaaaagcagagatgtgtctcacaataaactggactctgaagtggtaccc
aaagtggcccgtatgaccgtctctggcaagaagcagaccatgggctttgatgttcccagc
acaggggagaatggcgttgtcacggcttcggtacgccgtggtggcagccctgaagacgcc
accgcaacccctgcctcagaggccacgcccaagcgccctgagactccagctaaagggtcc
aatggagacgagccctccacagttcccaccccaggccgctcctctggaaaggctcggcag
tcgatcaatatcaaagctgaactggagaagaggcaggggggcaaacctctgttaaatctg
gttgttataggtcatgtggatgcgggtaaaagcacactgatgggccacctgctttatctg
ctgggcaacgtcaacaagcgcaccatgcacaagtatgagcaggaatcgaagaaggcggga
aaggcctccttcgtctatgcttgggtcctggacgaaactggcgaggagagggacagaggt
gtgacaatggatgtgggcatgaccaagtttgagacaaactctaaagtggtgaccctgatg
gatgcaccaggacacaaagacttcatccccaacatgatcacaggagctgcacaggccgac
gtggcggtgctggtggtggacgcaagccgaggagagtttgaggcaggcttcgaggcgggc
ggtcagaccagagagcatgcactgttggtgcgttcgcttggcgtcactcagctggctgta
gctgtcaacaagatggaccaggtaaactggcaacaagagcgtttccaagacatcattacc
aaacttggccattttctcaagcaggcaggattcaaggagtctgatgttttctacatcccc
agcagcggtctgtcaggagagaacctcaccaccaggagtacagtgtcacaacttacctct
tggtactctggtcccagcctgctggagcagattgacgccttcaaagccccccagcgatct
gtagacaaaccgttcagactgtgtgtctccgatgtgttcaaagaccagggttcaggcttc
tgtgttaccgggaagatcgaggccggttacattcagaccggagagagaatactggctatg
cctcccaatgaaacctgcactgtcaaaggtattactctacacgatgaggctctggactgg
gccgcagcaggagaccatgtcagcctgacagtcaccggcatggacatcatcaagatcaat
gtgggctgtgtgttctgtgatcccaaggagcctattcgagtctgtactcgattcagagcc
cgaatccttctcttcaatatcgaggttcccataacaaaaggcttcccagttttgctgcat
taccacacagtcagtgagccggcaaccattaggaaactgattagcgttttacacaagagc
agcggtgaggtcctcaagaagaaaccaaagtgcttgagtaaaggcatgaatgccattgtg
gagatccagacccagaggccggtgtcattagagctgtacaaggacttcaaggagctgggc
cgcttcatgctcagatacgtcggctccaccattgctgcaggggttgtcactgagatcaaa
gaatga
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