Sander lucioperca (pikeperch): 116066115
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Entry
116066115 CDS
T07345
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116066115 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116066115 (cpsf2)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116066115 (cpsf2)
U7-dependent histone pre-mRNA processing factors
116066115 (cpsf2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
116066115
NCBI-ProteinID:
XP_031177810
Ensembl:
ENSSLUG00000018341
UniProt:
A0A8C9ZJ09
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Position
19:10965608..10975566
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AA seq
787 aa
AA seq
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MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDELLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKDLEEYLEKEKVKKEAAKKLEQAKEVDVDSS
DESDMDDDLDQPAAVKTKHHDLMMKSEGSRKGSFFKHAKKSYPMFPTHEERIKWDEYGEI
IRLEDFLVPELQATEDEKSKLESGLTNGDEPMDQDLSVVPTKCVSSVENLEIRARISYID
YEGRSDGDSIRKIINQMKPRQLVIVRGPPEASLDLAESCKAFSKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKDDAEDGE
LAMDVAPDLGIDQDATAVAAQRAIKNLFMEDEKEVSEESDVIPTLEPLPPHEISGHQSVF
INEPRLSDFKQILLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagttgacagccgtgtcaggggttcaggaggagtcggccctctgt
tacctgctgcaggtggatgaattccgcttcctcctggactgtggctgggatgagaacttc
tcaatggacatcattgatgctatgaaaagatatgttcatcaggtagatgctgtgctcctc
tcccaccctgaccccatacacctgggagccctgccatatgctgtggggaaactgggtctg
aactgcactatctatgctacaattcctgtctacaagatgggtcaaatgttcatgtatgat
ctatatcagtctcgaaataacagtgaagatttcacactgttcactctcgatgatgtggat
tgtgcttttgataaaatccagcagttaaaatactctcagattgtcaatctaaaaggcaaa
gggcacggcctttccatcactcctcttccagctgggcacatgattggaggcactatttgg
aaaattgtgaaggatggagaggaggagatcgtttatgctgtggacttcaaccacaagaga
gaaatacacctcaatggctgcacgttggagagcattagtcgtccttccttgcttatcaca
gactccttcaatgctacatatgtacagccgcgtcgcaaacagagagatgagctgctcctt
accaatgtaatggagacccttcgtggtgacggtaatgtccttattgccgtggatacagct
gggcgtgtgttggagctggctcagctcctggaccagatttggaggacaaaggatgctggg
ctgggagcctacccactagctctgctgaacaatgtcagctacaatgtggtggagttctcc
aagtcccaggtggagtggatgagtgacaagctcatgaggtgttttgaagacaagaggaac
aaccccttccagttccgtcacttgaccctctgccacagtctggcagacctggcccgggtg
cccagtcccaaggtggtgctttgcagccagccagacctcgagtctggcttttccagagaa
ctcttcatccagtggtgccaagacgccaaaaactccgtcatcctgacctaccgcactaca
cctggaacccttgcccgctacctcatcgacaaccccggagagaagatgctggatctggag
gtgaggaaaagagtgaaactcgaaggcaaggatctggaagaatatcttgaaaaggagaaa
gtaaagaaagaagcagctaaaaaacttgaacaagcaaaagaggtggatgtagactcgagt
gacgagagcgatatggacgatgatctggaccagccagctgcagtgaaaactaaacaccac
gacctgatgatgaagagcgaggggagccgcaaaggcagcttcttcaaacacgccaaaaag
tcttatcctatgttccccacacatgaagagagaatcaaatgggacgagtatggggaaatc
atcaggctagaagactttctggttcctgaactgcaagccacagaggatgagaaaagcaaa
ctggaatccgggttgaccaacggtgatgaacccatggaccaggatctctctgttgttccc
accaaatgcgtctccagtgtagaaaatcttgaaattagagcgagaatctcgtacatagac
tacgaaggtcgctctgatggcgactccatcaggaagattattaatcagatgaagcccaga
cagctggtgatcgttcgcgggccgccggaagccagtctggacctggcagagtcctgcaag
gcattcagcaaggacatcaaagtctacacacccaaactgcaggagactatagacgccacc
agtgaaacacacatctaccaggtgcggttgaaagactccttggtgagctccctgcagttc
tgcaaggccaaagacacagagctggcctggatcgacggcgtgctggacatgcgcgtggtg
aaggtggacacaggcgtgatgctggaggagggggtgaaagacgatgctgaggacggcgag
ctggccatggacgtggcccccgatctcggcatcgaccaagacgccacggcggtggcggca
cagcgcgccatcaagaacctgttcatggaggacgagaaggaggtgtccgaagagagtgat
gtcattcccacgctggagccactgcctccgcacgagatttcagggcatcagtcggttttc
atcaacgagcctcgcctgtcggacttcaagcagatcctgctgagagagggcatccaggct
gagtttgtgggaggagtgctggtatgcaacaacatggtggccgtccgcaggacggaggca
ggacgcattggcctggaaggctgcctgtgtgacgactactataagatccgggagctgctg
tatcagcagtacgccgtggtatag
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