Sander lucioperca (pikeperch): 116066167
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Entry
116066167 CDS
T07345
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04140
Autophagy - animal
sluc04148
Efferocytosis
sluc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116066167 (vps18)
04148 Efferocytosis
116066167 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
116066167 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sluc04131
]
116066167 (vps18)
Membrane trafficking [BR:
sluc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116066167 (vps18)
Hops complex
116066167 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_11
zf-RING_Vps41
zf-C3HC4_2
zf-RING_16
DUF5600
DUF1664
zf-RING_2
zf-RING_UBOX
zf-ANAPC11
Apolipoprotein
zf-rbx1
zf_RING_Vps8
zf-C3H2C3
zf-RING_5
KNOX2
DUF4446
LETM1_C
Motif
Other DBs
NCBI-GeneID:
116066167
NCBI-ProteinID:
XP_031177916
Ensembl:
ENSSLUG00000000812
UniProt:
A0A8D0CML7
LinkDB
All DBs
Position
19:20539195..20545297
Genome browser
AA seq
982 aa
AA seq
DB search
MASILDEYEDSQNTRQSAQQHSRLSTANIGITHSGFVNVRLEEEKPIFNKQRIDFTPPER
INHLVVCNNQLCMSLGKDTLLRIDLAKPDQPNQIELGRKDESKVHRLFLDQTGSHLLICL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGNETNTGPILVGTSQGIIFEAEISA
TEGSLFNTNPDQYFRQVHSVDEDGKPAPVCCLEVERGLENKYFIIATTRKRLFQFVGKVA
EGSEQQGFSSIFSQNQDLLPSFQEFPANMGYSEITFYTSKLRTCPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVQVWDYTPDIDLSLNKPISIVLTQFHFLLLLHDRVKAICTLNGQVVYE
DVFPDKFGALKKMIKDPVGGLVWIYTERAVFRYHIQREARDVWQMYMSMTKFDLAKEYCR
DRPECMDMVLAKEAEHCFQNKRYIESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQSERTQITLLVTWLAELYLNRLGQLESDGNSVILQETREEFRQFLSSAKHKECLF
NNRSTIYDLLASHGNVDDMVYFSVVMQDYERVISHYCQHDDYSAALDVLSKHCDEKLFYK
FSPVLMQHIPKKVVDAWIQMGKRLDPKKLIPALMNYSQMGSTQQISETIRYMEFCVYELT
VTEEAIHNYLLSLYAKYKPDSLLWYLEQAGTHASEIHYDLKYALRLCAENGYLRACVLVY
RIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCL
SSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIEELKQEMEEATESAKRIREDI
QEMRNKYGVVDSQEKCASCDFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLTVYKQSRLEE
LQKKLAATTQSSKSRHRPAPKDEGDTSSLGKGNAGTSREQIKSDMDDIIASECVYCGELM
IKSIDKPFIDPQKFEEEKSSWL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaattcttgatgagtacgaagactcgcagaacaccaggcaaagtgcgcagcag
cacagccgcttgtcaacagccaacatcgggataacacattcaggttttgtgaatgtgaga
cttgaggaagagaaaccgatattcaacaagcagaggatcgattttacaccgcctgagagg
ataaaccatcttgttgtctgcaacaatcagctatgcatgagtctgggaaaggacaccctg
ctgaggattgatttggccaagccagatcagcctaatcagattgaactgggaaggaaagat
gaaagtaaagtgcacagactgttcctggaccaaaccggctcccatctgctgatctgcctg
agcaccagtgagtgtttgtaccttaacaggaacacgcagaaggtgcgcagtctgtcccgt
tggagaggccacctcatcgagagcgtgggctggaacaagctgctgggcaatgagaccaac
acaggacccatcctggttggcaccagtcaaggcattatctttgaggctgagatctctgcc
actgaaggcagcctgttcaacaccaatccagatcagtacttcagacaggtccactctgtg
gacgaggatgggaagcctgcaccagtctgctgcctggaggtggagcggggcctggagaac
aagtacttcatcatcgccaccacccgcaaacgcctgttccagtttgtgggtaaggtggct
gaggggtcagagcagcaaggcttcagctccatcttcagccagaaccaggacctgctgccc
agtttccaggagttcccagccaacatgggctacagcgagatcaccttctacacctccaag
ctccgaacctgccctaaggcgttcgcctggatgatgggtaatggagttctttatggtcag
ctggactatgtcaggcctgattccctgctgagtgatgtgcaggtatgggactacaccccg
gacattgaccttagtctcaacaagcccatctccattgtgctgacgcagttccactttctg
ctgctgctccatgaccgagtgaaggccatctgcactctgaacggacaggtggtatatgag
gatgtgttcccagataaatttggcgcccttaagaagatgatcaaggacccagttggtggg
ttggtgtggatctacactgagagggcagttttccggtaccacatccagcgcgaggccagg
gacgtgtggcagatgtatatgagcatgactaaatttgacctggccaaggagtactgccgt
gaccggccggagtgcatggacatggtgctggccaaggaggctgagcactgcttccagaac
aagcgatacattgagagtgccaagtgctatgcgctgacacagaactactttgaagagata
gcactcaagttcatcgaagccaaacaagaggaagctctaaaggagttcttgctgaagaaa
ctgaacaatttgaaacagagtgagagaacgcagatcaccttgctggtcacctggctagcc
gagctctaccttaatcggctcggccagctggagagcgatggtaacagcgtcatcttacag
gagacccgtgaggagtttcggcaattcctcagcagcgccaagcataaggagtgcttgttc
aacaaccgcagcaccatctacgacctgctggccagccacggcaacgtggacgacatggtt
tacttctcagtcgtcatgcaggactatgagagagtcatatcccactactgccaacatgac
gattacagcgctgccctggacgtgctttccaagcactgtgatgaaaagcttttttacaag
ttctctcccgtcctcatgcagcacattcccaaaaaagtggtcgatgcgtggattcagatg
ggcaagcggctggacccgaagaagctcatcccagctctgatgaactacagccagatgggc
agcacccagcagatcagtgaaaccatccgctacatggagttctgtgtgtacgagctgacc
gtgacagaggaggccatccataattacctgctgtcgctctatgccaagtacaagccggac
tctctgctctggtatctggagcaggcaggtacacacgcctcagagatccactatgacttg
aagtacgccctcaggctgtgtgcagaaaatggctacctccgggcctgtgtcctggtttat
aggatcatggaactgtatgaggaggcagtggatcttgctttacaagtagatgtagacttg
gccaagtcatgtgcggaccttcctgaagatgacgaggagctgaggaaaaagctttggctg
aagatcgcccggcatgtggtgcaggaggaaaaagatgtgaagaaagccatgaactgtctg
tccagctgcaacctgctcaagatcgaagacatcctgcccttcttcccagactttgtcacc
attgaccattttaaggaggccatctgcagctccctggaggagtacaatcagcacatcgag
gagctgaagcaggaaatggaagaggccacggagagcgctaaacgcatcagagaagacatc
caggaaatgaggaacaaatatggcgtagtggattcccaagaaaagtgtgcttcttgtgac
ttccctttgctcaacaggcccttctatctgttcctatgtggacacatgttccactatgac
tgcctgttccaggaggtgacccctcacctgacggtctataagcagagtcgtctggaggag
ctgcagaaaaagctggccgcgaccacgcaatcgtccaagtcacgccaccgcccggcaccc
aaggacgaaggagacacttccagcctgggaaagggcaatgcaggcacaagccgcgagcag
ataaaatcagacatggatgacatcattgcgtctgaatgcgtgtactgcggcgaactgatg
atcaagtccatcgacaagcctttcattgatccacagaaatttgaggaggaaaaatccagc
tggctatga
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