Sander lucioperca (pikeperch): 116066295
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Entry
116066295 CDS
T07345
Symbol
afdna
Name
(RefSeq) afadin isoform X10
KO
K05702
afadin
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04517
IgSF CAM signaling
sluc04520
Adherens junction
sluc04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
116066295 (afdna)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
116066295 (afdna)
04530 Tight junction
116066295 (afdna)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
RA_3
PDZ_2
Yop-YscD_cpl
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
116066295
NCBI-ProteinID:
XP_031178136
Ensembl:
ENSSLUG00000008774
LinkDB
All DBs
Position
19:complement(6619422..6730788)
Genome browser
AA seq
1958 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISRPTEDLEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERQLDMDEKPLVVQLNWNKD
DREGRFVLKNENDILPKKSQSNGPEKEKDGVIQNFKRTLSKKEKKKEKKREKESARIPDG
DEQALSREDGENNRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFMSSDGR
PDSGGTLRIYADSLKPNIPYKTILLSTRDTADFAVVEALEKYGLEKENPREYCIARQDDK
SGKDMILDDTECPLQIFRDWPADRGSLVFQLKKRPPDYQGRKGRKGDDKGLRGKEGSTSS
LPPEKLPYLVELSPGRGNHYAYYTYRHHEDGSDSRDKPKLYRLQHSITEVGSDCTEDGAI
QLLGPGILPHHCNLMHSEGMVTVTPHGPDADTFVDGQRITETTLLRSGSTLQFGSAHVFK
FVDPMFDQGGKREPASMMRGRHKSGSVPETTFDLHGDVHSGSALPTSKSSGKLEMERGMV
KPMIRGEQQDSRSQDISADRTELTLPAGIEFRDNSEDTFLSAIINYTNSSTVHFKLSPTY
VLYMACRFVLSPSYRPDMSPSERTHKVIAIVNKMVSMMEGVIQKQKNIAGALAFWMANAS
ELLNFIKQDRDLNRVTLDAQDILAHLVQMAFKYLVHCLQADLNNYMPAFLDDPEEHNPQR
PKIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNKLVTDTESGLCCHYWG
AILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSMQDVQNIHNTCFKLNSL
QLHALMTNYHCAPDEPYIPPELIDHVVAVAENTADELARSDGREVQLEEDPDLQLPFLLP
EDGYSCDVVRSLPNGLQDFLEPLLQRGFCRLVPHPRSPGTWTVHFEGADCDSHFSAADSS
EMPMRKDPEVVTVTLKKHNGMGLSIVAAKGAGQEKLGIYIKSVVKGGAADVDGRLAAGDQ
LLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATLLNQPSPMMPRASDRG
RDKNGKLRPKSEGFELYNNSVQNGSPESPQAGWDSYPEPKKMSNEDRLLKNRADHRSSPN
VANQSQSPAGKAVYPGGPGTKITSVSTGNLCADDEPSPPRPEAYPIPTQTYPREYFTIPA
SKSQDRVVGPGQGPSQHWQGMEDRERLPLVDNIHNSMQRINHSQEELYPSPGGMRPDERM
QQHYQQDYQHRDLDYQHRDLDYQRGPPGGGPDHWAPQPQVSSSLESSTSSQEHLNFSAAS
SSSSQKNQKTGPGRWKTPNAPHAAPPHSAQAPSRSDLPPPPPPPPAPYPEAYDPYEPQPE
LPLPPPPSAVSPATAQQAADRKKREEQQRWYEKEKARLEEERERKRREQERKLGQIRANP
VMPVQPHNNGGSMPPPHHQPPLPSAAPPQPYLPPQPQPQPPPSRPEKLASLPRSAVPPPA
NASNPGMDTVIRELLPQQQPRTIERRDLQYITISKEELTSSDSLSPDPWKRDAREKAEKQ
QQLHIVDLLDKEIQDLQSKPERTAEESDRLRKLMLEWQFQKRLQESKQSDEDEEEEDDED
VDTLMIMQRLEAEKRARQQNAVPAISVLDLLQDEERRRKQQLEEIRKREAEERAKQEEER
RWREEAKREAGEKRRQEEEYYTRLEAERRRQHEEAERKLLTPDEPAGLYRPPLPRDYQPP
APHTPTNTPPPPPQRNTSYLKTQVTSPDTLYTAKFVSYEGDEEDEEEATKAGSGGGNQSG
QVKLSATRKSYGDLQASASPNHTRHRPPPTARKPRPLSDGIFLSSSFQLPDNNSNSTGPP
LPAKPSSMPPGGFKGFNSYTGNSAGVVGSGEVYNDPRDKWPKRCCSGSQEQENSNPSGAP
ESLTFKERQRLFSQGKEVSNKVKASRKLMELENELNTK
NT seq
5877 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagcagggaggaggagaggaggaaactggccgacatcatcaaccattggaac
gccaaccggctcgacctgttcgagatcagccggcccacagaggacttggagttccatggc
gtgatgcggttctacttccaggatcgggttgccggtaactttgccaccaagtgcatcaga
gtgtccagcacagcgacaacgcaggacgtcatcgagacgttagctgagaagttcagacca
gacatgaggatgctctcctcgccaaaatactccctttatgaggtccatgtcagtggcgaa
gagcgtcagctggacatggacgagaagcctcttgttgttcagctgaactggaacaaagac
gaccgagaaggacgctttgtcttgaagaatgagaacgacatccttcccaagaagagtcag
agtaatgggcccgagaaggagaaggatggagtgatccagaacttcaaaaggactttgtcc
aagaaggagaagaaaaaggaaaagaagagagaaaaggagtccgcccggatccccgatgga
gacgagcaggcgctcagccgggaggacggggaaaacaatcgtctggcggcagaggtttac
aaggacatgccggagaccagctttaccaggacaatctccaacccagaggtggtgatgaag
aggagacgccagcagaaactggagaaacgcatgcaggagttcatgagcagtgatgggagg
cccgactcaggaggcactttgcggatatacgctgacagtctgaagcccaacatcccgtat
aagaccatcctgctctccactagagacacggctgactttgctgtggtggaggcgctggag
aagtacgggctggagaaggagaaccccagagagtactgcatcgctcggcaagatgataag
tcgggcaaggacatgattctggacgatactgagtgtccactgcagatcttcagggactgg
cccgctgacagaggttcgctagtgttccagctgaaaaagagaccccccgactaccagggg
aggaagggaaggaaaggcgacgacaagggccttcgagggaaggagggcagcaccagctcc
ttgccgcccgagaaactgccttacctggtggagctgagcccagggcgagggaatcactat
gcctactacacctatcggcaccacgaagacgggtctgactcacgtgacaaaccaaagctg
taccggcttcagcacagcatcaccgaggtcggctcagactgcacagaggacggagccatc
cagctgctcggtccggggattctgccccaccactgcaacctcatgcacagtgaaggcatg
gtcactgtgacgccgcacggcccagacgcagacacctttgtcgacgggcaacgaattacc
gagacgacgctgctgcgttcgggctccaccctccagtttggttctgcacacgtcttcaag
tttgtggacccgatgttcgaccagggagggaaaagagaaccggcctccatgatgaggggc
cgacacaagtctggcagtgtaccagaaaccaccttcgaccttcacggagacgtccacagt
ggatctgctctgcctaccagcaagagctcagggaagctggagatggagagaggcatggtc
aaacccatgatcagaggagagcagcaggacagcaggtctcaggacatttcagcagacaga
acagagttgactctgccagccggcatcgagttcagagacaactctgaagacaccttcctg
tcagccatcatcaactacactaacagctccacggtccacttcaaactctcacccacctat
gtcctgtacatggcctgccgcttcgtcctgtcaccttcttaccggcccgacatgtcgccg
tctgagaggacgcacaaggtcatcgccatcgtcaacaagatggtgagcatgatggaggga
gtcatccagaagcagaagaacattgcaggagcgctggctttctggatggccaacgcctca
gaactgctcaacttcatcaagcaggaccgagacctgaatcgcgtcacgctggatgcccag
gacatcctcgcccatctggtccagatggctttcaagtacctggtccactgtcttcaggct
gatctcaacaactacatgcctgccttcctggacgaccccgaggaacataatccacagaga
cccaaaatcgaggatgtcctgcacaccctgacgggggcgatgtcgttgctgcggcggtgt
cgagtcaacgccgccctgaccatccagctcttctctcagctcttccacttcatcaacatg
tggctcttcaacaagctggtgacggacacagagtcgggcctgtgctgtcactactggggg
gccatcctccggcagcagctcagccacatcgaggcctgggcagagaaacagggtctggag
ctcgccgccgactgccacctcagtcgaattgtacaggccaccaccctgctcaccatggac
aaatactccatgcaggatgtgcagaacatccacaacacctgctttaagctcaactccctg
cagctccacgcactcatgaccaactaccactgtgctccagacgagccttacatcccacct
gagctgatagaccacgtggttgctgtggcagaaaacacagcagatgagctggcgaggagt
gatgggagagaggtccagctggaggaggatccggacctgcagctgcccttcctccttcct
gaggatggctactcctgcgatgtggtgcgcagcctccccaacggcctgcaggacttcctg
gagccgctgctgcagagaggtttctgtaggttagtaccccatccccgttcgcctggtacc
tggactgtccactttgaaggagctgactgtgacagccacttctccgctgctgacagttct
gaaatgccaatgaggaaagacccggaggttgtcacggtaaccctgaagaagcacaacggc
atgggcctcagcatcgtggctgccaagggtgctggtcaggagaagctgggcatctacatc
aagtctgttgtcaaaggaggagcagctgacgtggatggacgtctggctgcaggtgaccag
ctgttgagcgtggacgggcgcagcctggtcggcctatcacaagagagggcagcagagctg
atgacgaggacaggctcagttgtgactctggaggtggccaagcaaggagccatttaccac
ggactggctactctcctcaaccagcccagccccatgatgccaagagcatcagaccgaggc
cgcgacaagaacgggaaactgcgaccaaagagcgaaggcttcgagttgtacaacaactcg
gtgcagaacggctctccggagagtccgcaggccggctgggattcttaccccgaaccaaag
aagatgagcaatgaagatcgacttctcaagaaccgagccgaccaccgctccagccccaac
gtagccaatcagagccagagtcctgcgggaaaagcggtgtaccccggaggacctggcact
aagatcacctccgtctccaccggcaacctgtgtgcagacgatgagccctcccctccccgt
ccagaggcctaccccatccccacccagacctaccccagggagtacttcaccatcccggcc
tcgaagagccaggatcgggtcgttggtcctgggcaggggccctcacaacactggcagggc
atggaggacagagaacgcctccctttggtcgacaacatccacaacagcatgcagcggatt
aaccattcccaggaggagttgtacccctcaccaggaggtatgaggccagacgagcgcatg
cagcagcactaccagcaggactaccagcaccgggacctggactaccaacaccgagatctt
gactaccagagaggtccaccgggaggaggtcctgaccactgggccccacagccgcaggtg
tcctcctcgttggagtcatccacatccagccaagagcacctcaacttctcagccgcctcc
tcctcctcgtcccagaagaaccagaagaccgggccgggccgatggaagacgcccaacgcc
cctcacgctgcgccgccacattcggcacaggcgccttcgcgctccgacctgccccctccg
ccgcccccaccaccggccccttaccctgaagcctacgacccctacgaaccccagcctgag
ctaccgctcccgcctcctccctccgccgtctctcccgcaacagcccagcaggctgctgac
cgcaagaaacgcgaggagcagcaacgctggtatgagaaggagaaagctcgtctggaggaa
gagagggagaggaagaggagagagcaagagaggaagctgggtcagatccgggccaacccc
gtcatgcctgtccaacctcacaacaacggaggatccatgcctcctcctcaccaccagccc
cctctgccctctgcggccccgccccagccctacctccccccacagcctcagccacagcct
cccccatccagacccgagaagctggccagcctgccacgatcggctgttcctccccctgct
aacgcctccaaccctggcatggacacagtgatcagggagctgttgccacagcagcagcca
cggaccattgagaggcgagacctgcagtacatcaccatcagtaaggaggagctaacgtcc
agcgacagtctgtctccagacccctggaaacgagacgcccgggagaaggccgagaaacag
cagcagcttcacatcgtcgacctgctggacaaggagatccaggacctccagtcaaagcca
gagcgaactgcggaggaaagcgaccgcttgaggaagctgatgctagagtggcaattccag
aaacgactgcaggagtccaagcaaagcgacgaggacgaggaggaggaggatgacgaggac
gtggacaccttgatgatcatgcagaggctggaggccgaaaagagagccaggcagcagaat
gctgtcccagctatctctgttctagacttgttgcaggacgaagagcgacggcgtaagcag
cagctggaggagattcgtaagcgggaagcggaggagcgagcaaaacaggaggaggagaga
aggtggagggaggaggccaaacgagaggcaggggagaagaggagacaggaggaggagtac
tacactcgcctggaggccgagcggcgccggcagcacgaggaggccgagagaaagctgctg
acgcctgacgagccggccggtctgtatcggcccccgctgccccgggattaccaacccccc
gccccccacacccctactaacacccccccgccccccccacagagaaacacctcctacctc
aaaacccaggtcacctcccccgacacgctctacaccgccaagtttgtctcctacgagggc
gatgaggaagacgaggaggaagccaccaaagcagggagtggcggcggcaaccaatcaggt
caggtgaagctgtcggcgaccaggaagtcgtacggcgacctccaggcctccgcctcaccc
aatcacaccaggcaccggccgccgcccactgcgcgcaagccccgccctctttcagacggc
atcttcctgtctagctcgttccagctgccagacaacaactccaacagtacaggtcccccc
cttcctgccaaacccagctccatgccccccggaggctttaaaggatttaactcgtacact
ggaaactcagcaggagttgtaggatcgggagaagtctacaatgacccgcgagacaaatgg
ccgaagaggtgctgcagcggcagtcaggagcaggagaactctaaccccagcggcgctccg
gagagtctcacctttaaggagcgccagcgtctcttctctcaggggaaggaggtgtccaac
aaggtcaaggcttcacgcaaactcatggagctggagaacgagctcaacaccaagtag
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integrated database retrieval system