Sander lucioperca (pikeperch): 116066880
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Entry
116066880 CDS
T07345
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116066880 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116066880 (smarcc1b)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116066880 (smarcc1b)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116066880 (smarcc1b)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116066880 (smarcc1b)
PBAF complex
116066880 (smarcc1b)
GBAF(ncBAF) complex
116066880 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
116066880
NCBI-ProteinID:
XP_031178917
Ensembl:
ENSSLUG00000019803
LinkDB
All DBs
Position
16:complement(20617218..20626234)
Genome browser
AA seq
955 aa
AA seq
DB search
MATMSGGTNLGIPGTSQASSGTSAHRKKDSSPSARFWESPDTLAQLEVVRQWIGKHYKKY
VLVDAPSCQALAAVTLQLLQFQEDAFGRQATSPSLTKLPTQCFLDLRPGGGLCHILGTAY
KFKAAQGWRRFDLQNPSRTERNVEMFGSIERALIQNNCMSLPVVYLDPTLDQELTSRLTD
IITKHQGTITEDRTLASHHIYPSSASTEEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLSS
SDVEGEVEEPPHTEKPWRVHACWVLDTDVFNEWMNEEDYCVNERNAPIIFRRRIHLRDDQ
DSKHTPFKKRRRSPSPPSSEGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEEVIL
PKNVNLKKDSENTPVKGGTMADLDEQEDDFPGREDEEGRGEITRLSEGEDNVTEQTHHII
IPSYTSWFNNNSIQSIEKRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTS
CRRNLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQ
HKPLQVSASQHMLYFPEKSREKPSDSQNFGLRSDIYTKKHPKTKGASAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQS
ENPVMSTVAFLASVVDPRVASSAAKAALEEFSRVQEESVDKVSETSNQLDRTESMDAEKI
DTNSTTHQVPLRADVLKVESSGAKVEGELVKRENVLADERDGRGDDDESLGRGDVDEGRV
MEQDLVEGSVATAAAAALSSAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEE
LETIMDREKEALEQQRQQLLSERQTFHTEQLKTAEMKVRQQREQQGQQGQPGYTMQQSAL
PPPSGQSMPNRMMPGGGNAQTMAPRLSGAPNGMYPSSQPDGIAPAQPGPQVSNHS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtctggaggaacaaacctcggcattcccgggacaagccaagccagctct
ggcacatccgcacaccggaaaaaagacagcagtccgtccgctaggttctgggagagtccg
gatactttagcccagcttgaggtggtgcgacagtggatcgggaagcactacaaaaagtat
gtgctggtggatgctccatcgtgtcaggctctggctgcagtaaccctgcagcttctccag
ttccaagaggatgcctttggcagacaagctaccagtcctagtctcaccaaactgcctaca
cagtgcttccttgacctgcgaccagggggtggactctgccacattcttggcactgcctac
aagttcaaggctgcgcaaggctggcggaggtttgacttgcagaatccatcaagaactgaa
aggaatgttgagatgtttggtagtattgaaagagcgctgatccagaacaactgtatgtca
ctgcctgtggtatatctggaccctacgctggatcaggagctgactagcagacttacagat
attatcaccaaacaccagggtacgatcactgaagaccgaacactcgccagtcaccacatc
tatccctcatctgcttctacagaggaagatgaatggatgcgccctgtcatgcggaaagac
aaacatgttttggtacactggggcatgcaccctgacagttacgacagttggttgtcctca
agtgatgttgaaggagaggttgaagagccaccacatacagaaaagccgtggcgggttcat
gcctgctgggttctggacacagatgttttcaacgagtggatgaacgaagaggactattgt
gtgaatgagaggaatgcaccaatcattttccgccgacgtattcacctcagagacgaccag
gactccaaacacacccccttcaaaaagagaagacgctccccctcacctccttcctctgaa
ggcaggaagaaaggaaagaaggggagaaggcgtggacaacaggaggaagagccagaagag
gacttgaccaaagacatggaggaccctacccctgtcccaaacatggaggaggttatacta
cccaagaatgtcaacctgaagaaggacagtgagaatactccagtcaaaggagggaccatg
gctgacctggatgaacaggaggatgatttcccaggaagggaagatgaggaggggagaggg
gagattactcgcctgtcagagggggaggacaacgtcacagaacaaacccatcacatcata
ataccaagctacacatcttggttcaataacaacagcattcagtcaatagagaaacgtgcg
ttgcctgaattcttcaatggaaagaacaagtccaaatctccagaaatctacctggcatac
cgtaacttcatgattgacacgtaccggctgaacccccaggaatacctcagctcaacgtcc
tgtagacgcaacctcactggagacgtctgtgcggtcatgagggttcatgcttttttggag
cagtggggtttgattaactaccaggtggatgcagagagcagacccctccccatgggaccc
ccgcccacccctcatttcaacgtactggcggacacaccgtccgggcttgcccccctacaa
cacaaacccctacaggtgtccgcctcgcaacacatgttgtatttcccggaaaagagtaga
gagaagccttcagactcccagaactttggtctgcgctccgacatctacaccaagaaacac
ccaaagactaaaggagcgagtgcaggaagggaatggacagagcaagagactctcttgcta
ctagaggccttagaggtctacagagacgactggaacaaagtatccgagcatgtcggttcc
aggacgcaggacgagtgtatccttcacttccttcgcttgccgatagaagacccttaccta
gaagactcctcggcctccctcggcccactggcgtaccagcccgtgcctttcagccaatca
gaaaacccggtcatgagcactgtggccttcctggcatccgtggtggacccacgggtggca
tcatccgcagctaaggccgcactggaggagttttcccgagtgcaggaggagtcggtggat
aaggtctccgaaacgtccaaccagctcgacagaacagagtcgatggatgcagaaaaaatt
gacacaaactcgaccacccaccaggtccctttgagggcagatgtgctcaaggttgaatcc
agtggagccaaagtggagggagaacttgtcaaaagagaaaatgtacttgccgatgagaga
gacggaaggggagatgacgacgagagcctagggcggggagacgtggatgaggggagagtg
atggagcaggatctggtggagggcagtgttgccacggcagcagcagctgctctgtcctca
gctgccacaaaggccaagcacttggcggcagtagaagagaggaagatcaagtccctggtg
gctctgctggtggagacccagatgaagaagctggagatcaaactgaggcactttgaggag
ctggagaccatcatggaccgtgagaaagaagctctggagcagcagcggcagcagctcctg
tcagagagacagactttccacaccgagcagctgaaaacggcagagatgaaggttcgccag
caaagggagcagcaggggcaacaggggcagcctggatacacaatgcagcaatcagccctg
cctcctccttcaggccagtccatgcccaaccgcatgatgcctggtggaggaaatgcccag
acaatggctcctcgactctctggagctcccaatggcatgtacccgtcctcgcagcctgat
gggatagcaccagctcagccgggtcctcaagtgtccaatcacagctga
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integrated database retrieval system
