Sander lucioperca (pikeperch): 116066904
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Entry
116066904 CDS
T07345
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 1 isoform X12
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04145
Phagosome
sluc04814
Motor proteins
sluc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
116066904
09142 Cell motility
04814 Motor proteins
116066904
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
116066904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sluc03036
]
116066904
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sluc04812
]
116066904
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
116066904
Cytoskeleton proteins [BR:
sluc04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
116066904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dynein_IC2
WD40_CDC20-Fz
WD40
WDR55
WD40_Prp19
Beta-prop_EML
Beta-prop_EML_2
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_HPS5
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
Beta-prop_EIPR1
Beta-prop_SPT8
Big_2
Motif
Other DBs
NCBI-GeneID:
116066904
NCBI-ProteinID:
XP_031178953
Ensembl:
ENSSLUG00000011368
LinkDB
All DBs
Position
16:21496432..21555820
Genome browser
AA seq
648 aa
AA seq
DB search
MSDKSDLKAELERKKQRLAQIRQEKKIKEEERKKKESESQQKREATPEDSDLDRKRRETE
ALLQSIGISPEPSLVPTPVSPSKSVSTPSETGSQDSTDGGAAGRFRSGFSKNKSQAQSSR
TLQWDTDPSVLQLQADSEHGRRMQRLGASKITQVDFLPKEVVSYCKETQTPLTAHLSEVE
EEEEDEEMMEAKSGPESEQQDEDDNRENKEGSFPVLRELTEEERQQILHSSEFQSFFECS
IRVMERALAEDSNIFFDYGGRELEDKEGDLGSGSSLSFSRLFYDEHWSKHRVITCLDWSL
QYPELLVASYNNNEDAPHEPDGVALVWNIKFKKATPEYIFHCQSPVVSVGFARFHPNLVV
GGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNANNLITVSTDGRMCS
WSLDMLSQPQETMELVYNKSKPVAVTGMAFPTGDVNNYVVGSEEGTVYTASRHGSKAGIC
EMFEGHQGPVTGISCHSAVGTVDFSHLFITSSFDWTVKLWSTKHNKPLYSFEDNADYVYD
VMWSPVHPAIFAAVDGMGRLDLWNLNNDTEVPTASVTIEGASALNRVRWSSGGKEVAVGD
SEGRVWIYDTGELSVTHTDDWARFARTLMEIRANRADGEEEGPMELAS
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacaaaagtgacctaaaagcagagctggagcgtaagaagcagcgcctcgcccaa
atcaggcaggaaaaaaagataaaggaggaggagaggaagaagaaagagtcagagagtcag
cagaagagagaggccaccccagaggattcagacttagaccgcaagcgcagggagactgag
gccctgctgcagagtattggcatctcaccggagccttcactagtcccgacccctgtgtcc
ccctccaaatcagtgagcacacccagtgagacggggagccaggattcaactgatggagga
gcagcaggcaggtttaggtcaggtttctctaaaaacaagtcccaagcacagagctcaagg
acgctgcagtgggacacagacccctccgtgctgcagctgcaggctgattctgagcacggg
cgcaggatgcagaggctgggagcctctaagatcacacaggtagacttccttcccaaagag
gtggtctcttactgcaaggagacgcagacgccactcaccgcccacctgtctgaagtagag
gaggaagaggaagatgaggagatgatggaggcaaagtcaggccccgagtcggagcagcag
gatgaagatgacaacagggaaaacaaagaaggctcatttccagttctgcgggagctgaca
gaggaggagaggcagcagatcctgcactcttctgagtttcagagtttctttgagtgcagc
atccgggtgatggagagagctctggctgaagacagcaacatcttctttgactacggcggc
cgggagctggaggacaaagagggagacttgggcagtggctccagtctgtccttcagccga
ctcttctacgatgaacactggtcgaaacatcgcgtgatcacctgccttgactggtcgctt
cagtatcctgagttgctggttgcctcatataacaataatgaagatgctcctcatgaaccg
gatggtgttgccctagtatggaacatcaaatttaagaaggccacaccagagtacatcttt
cactgtcagtctccagtagtatctgtgggctttgccaggtttcatccgaacctggtggtg
ggggggacttactcgggacagatcgtcctgtgggacaaccgcagtcaccgtcggaccccc
gtccagaggactcctctgtctgctgctgcacacactcacccagtctactgtgtgaacgtg
gtcggcacccagaatgccaacaacctgatcactgtgtctacagacggcaggatgtgctcc
tggagtctggacatgctttcccagccacaggagaccatggaactggtgtacaataaatcc
aaacctgtggcggtgacaggcatggcttttcccacgggagatgttaacaactatgtggtc
gggagcgaggagggcactgtgtacactgcatccagacatggcagcaaggcgggtatctgt
gagatgttcgagggccaccaggggccggtgacgggcatcagctgccacagcgcagtgggc
accgtcgacttttcccacctcttcatcacgtcctccttcgactggaccgtcaaactctgg
agcaccaagcacaacaagcctctgtactcgtttgaggacaacgccgactatgtgtatgac
gtaatgtggtcgcctgtacaccctgcgatcttcgccgccgtagatggcatgggccgctta
gacctgtggaacctcaacaacgacactgaggtaccaactgccagtgtgaccatcgagggt
gcttcggccctcaacagggtccgctggtcgtcaggcgggaaggaggtggctgtgggcgac
tcagaaggccgagtctggatctacgatactggagagctgtcagtgactcatactgatgac
tgggcgcgcttcgctcgtaccctgatggagattcgtgctaaccgggcggacggcgaggag
gaggggcctatggagctggcttcatag
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