KEGG   Saccharomycodes ludwigii: SCDLUD_000235
Entry
SCDLUD_000235     CDS       T08289                                 
Name
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
slud  Saccharomycodes ludwigii
Pathway
slud03030  DNA replication
slud03410  Base excision repair
slud03420  Nucleotide excision repair
slud03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:slud00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SCDLUD_000235
   03410 Base excision repair
    SCDLUD_000235
   03420 Nucleotide excision repair
    SCDLUD_000235
   03430 Mismatch repair
    SCDLUD_000235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:slud03032]
    SCDLUD_000235
   03400 DNA repair and recombination proteins [BR:slud03400]
    SCDLUD_000235
Enzymes [BR:slud01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SCDLUD_000235
    6.5.1.6  DNA ligase (ATP or NAD+)
     SCDLUD_000235
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SCDLUD_000235
DNA replication proteins [BR:slud03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    SCDLUD_000235
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     SCDLUD_000235
DNA repair and recombination proteins [BR:slud03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SCDLUD_000235
   NER (nucleotide excision repair)
    Other NER factors
     SCDLUD_000235
   MMR (mismatch excision repair)
    Other MMR factors
     SCDLUD_000235
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 70105557
NCBI-ProteinID: XP_045936581
LinkDB
Position
I:complement(596445..598547)
AA seq 700 aa
MSSKNNTIGSKKQVTLARFFTSMKQKNDPETDNITKNISAENTITGDHSGISPTATKKIS
NEDNLSSSPLSKVTVPVPPSKKLHKNDTSPIILYSDLCDLYQDIESTSSRLSITSKLTDF
FNRVLEIDSNQLKIVTYLCINRLGPDYVSNLELGLGEGLLIKAIAESTGKKSAKIRSSYK
DHGDLGMVASKARSNQPTMFKPKPMSCKEVFETLTKIATTTGTNSQTKKIGLIKKMLTNC
SGNEAKFLIRSLESKLRIGLAEKTVLISLAQSLLKRELDNNNKSDSNNTSITVEEATDLI
RESFCQVPNYEIIIDTCLEYGISNLSKFIKITPGIPLKPMLAKPTKSVSEVLDRFQGETF
TCEYKYDGERAQVHLLADGSFRVYSRNSENMTERYPEIDLKKYIRDQDSMITLILDGEAV
AYDVEQMKILPFQILSTRKRKDVDALKVKVRVCLFIFDCLLYNDEVLINKTLKERREVLH
KVLKPVPGELQFANQIITTDIDEMQNYLDQSVQNSCEGLMVKVLDGKESHYEPSKRSRNW
LKLKKDYLAGVGDSLDLCVMGAYHGRGKRTGGYGGFLLGCYNDDTGEYETCCKIGTGFSD
EMLSKLYETLHPTEIEQPKSFYVFDNSAVPDVWFDPTMLFEVLTADLSLSPIYKAGINTL
GKGISLRFPRFLKIRTDKNIEDATTSNQVIDFYQSQNHIQ
NT seq 2103 nt   +upstreamnt  +downstreamnt
atgagtagtaagaataataccattggttccaaaaaacaagttacattagcaaggtttttt
acctctatgaagcaaaaaaatgatccggaaacagataatataacgaaaaatatcagtgct
gaaaacaccataacaggagatcatagcggcatctctcctacagctactaaaaaaatatct
aatgaggacaacttgtcatcttctccgttatctaaagttactgttcccgttccacctagc
aaaaaattacataaaaatgacacttcacccattatattatattcagacttgtgtgaccta
tatcaagatatagaatcgacatcttcaaggttatcaattacttccaaattgactgatttt
ttcaatagagttttggaaatagattcaaatcaattaaaaattgtaacttatttatgtatt
aatagattaggtccggattacgtatcaaatttagaattggggctaggggaaggtttgttg
atcaaggcaattgcagaatctaccgggaaaaaatcggctaagattagatctagttacaaa
gatcacggtgatttaggaatggttgcatctaaagccaggtccaatcaaccgaccatgttc
aagccaaaaccaatgagttgcaaagaagtttttgaaactttgactaaaattgcgacgaca
actggaactaattctcaaacaaagaaaatcgggctgattaaaaaaatgttgactaattgt
agcgggaacgaggccaaatttttgattagatctttagaaagtaaattaaggattggatta
gcagaaaagacagttttaatttccttggcacaatctctactaaaaagggagcttgacaat
aacaataaaagcgatagcaataatacttcaattactgtcgaagaggcaacagatttaatt
agagaaagtttttgccaagtgcctaattacgaaattattatcgacacttgtttagaatat
ggaatctctaatctaagcaaatttatcaaaattactcctggtattccattaaaacccatg
ttggctaaaccaactaaaagtgttagtgaagtgttggataggtttcaaggagaaactttt
acttgcgaatataaatatgatggagaaagagcacaagttcatttattagcagatggtagt
tttagagtatattccagaaattcagaaaatatgaccgaaagataccctgaaatagatcta
aagaaatacataagagaccaagattccatgattacactaatattggatggcgaagctgtt
gcttatgacgtggagcaaatgaaaattttaccgttccagatattgagcactagaaaaaga
aaagatgttgatgccttaaaagttaaagttagagtctgtttgtttatatttgattgctta
ttatataatgatgaagttttaattaacaaaactttaaaagagagacgagaagtgttacac
aaagtgctgaaaccagtgccgggagaattgcaatttgccaatcaaataattacaacggat
attgacgaaatgcaaaactatttggatcagtcagtgcaaaattcttgtgagggtctaatg
gtcaaagttttggatggcaaagagtctcattatgaaccaagcaaaagatcaaggaattgg
ttaaaattgaaaaaggattatttagcaggcgttggtgactcgcttgatttatgtgtgatg
ggcgcgtatcatggtagaggaaaaaggacaggcgggtacggtggatttttgttggggtgt
tataatgatgacactggtgaatatgaaacttgttgcaaaatcggtactggattttcagat
gaaatgttaagcaaattgtatgaaactttgcatccaaccgaaattgaacaacccaaatcc
ttttacgttttcgataacagcgctgttcctgacgtttggtttgatccgactatgttattt
gaagttttaactgctgatttgtcgttatcacctatttataaagctggtataaacactttg
ggtaagggtatctccttaagatttcctagatttcttaaaatcaggactgataaaaatata
gaggatgctactacttctaaccaagttatcgatttttatcagtcacaaaatcacatacaa
taa

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