Saccharomycodes ludwigii: SCDLUD_000480
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Entry
SCDLUD_000480 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
slud
Saccharomycodes ludwigii
Pathway
slud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCDLUD_000480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slud03019
]
SCDLUD_000480
Enzymes [BR:
slud01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
SCDLUD_000480
Messenger RNA biogenesis [BR:
slud03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SCDLUD_000480
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SCDLUD_000480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_14
LRR_4
LRR_8
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
70105802
NCBI-ProteinID:
XP_045936813
LinkDB
All DBs
Position
I:complement(1146951..1149803)
Genome browser
AA seq
950 aa
AA seq
DB search
MNSLNQQPQQHLPPPGILHPPPGAIPPQNNTSATNSGGAIINNGLFANQQQQNIVNIGHI
NTFSGNSNANTSVAGINNVNNITNNSNTQPMFSNSVNMSNNDVHFDGMSRFQTLENTAGA
ANAKGTIIGAPNGGIENFSLSDKLQYAHNPQYGNPNIVTTNSMSSNSNTVNNNIVGTQQS
NTPLVQQYKNNFEQHINDPDYHPHLKNNALAKNVNWELQLLLAAVSRMVMSQEPNTYALK
NNFKSNIQQQQQKIFGTTLNTTTTTNPATVNGSNNTIGVASGGGGGVGGGVGVASSSGEP
FGTLVYMTKAALIALMSVSKTTTPKTNNDSSASSVNSNSNNNSNSTSNSTTTTASVISTN
NNTNGNTTNISMGNGQFTPSSTPGTPTVELVTTPGSSNNINLLLMQQRRIAQFNIDDDDE
EQENSEIEKPSNYDDQLWHGLDLCNLKLSKLNDRLFKFSFLTRLFLNGNNLTELPPSIKS
LVNLRVLDLSNNRLESVPPELGMLFNLKYLYLFDNRIKNLPYEFGNLFNLQFLGLEGNPL
DSDIIKIYSEKNLTGLIFYLRDNAPEVELKQDRKFIEINTDGEPTSNVYNSVNEAIEQLP
LKRTSFTLLSYNTLCQHYATPKMYRFTPSWALNWDYRREKLKEQIMSYKTDIICLQEVES
KTFDDFWSPLMEREGYSCIFHSKTRARTMQSKDSKKVDGCAIFFKKSEFKLIFKELVDFS
SVWMNSPKFSKTADYINRAMNKDNVSLYTKLHHIKSGENIWVATTHLHWDPKFNDVKTFQ
VGVLLDHLEKLVREQNHITTPGDYKKTPIIICGDFNSQRNSAVYELFNTGSVSNEHEDVK
GRDYGHMTKNNFVNDFQFRSCYDCIGELPFTNFSPTFIDVIDYIWYSPKSLRVRGVLGEI
DEDYVSKFIAFPNAKFPSDHIPLVGRFEFTGKGTDHAGGSPFSGSNSRKV
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgaactcattaaatcaacaaccacaacaacatctaccaccaccaggcatactacaccca
ccacctggtgccataccaccacagaacaatactagcgcaacaaattcaggaggagccatc
atcaataacggattatttgctaatcaacaacaacaaaacattgtaaatattgggcacata
aatacattcagtggcaactctaatgctaatacttctgttgccggcataaataatgttaat
aatatcaccaacaatagcaacacacaacccatgttctctaattctgtcaatatgagcaac
aatgatgttcattttgatggcatgagccgttttcaaactctagaaaatactgccggtgct
gcaaatgctaaaggtactattattggtgcccccaacggaggaattgaaaatttttctttg
tctgataagttgcaatacgcacataatccccaatacgggaaccctaatattgtaactaca
aattctatgtcttctaactcaaatactgttaataacaatatcgttggaacccaacaaagt
aacacaccccttgtccagcagtataaaaacaatttcgaacaacatattaacgatccagat
tatcatccacatttaaaaaataatgcattggctaagaatgttaattgggaactacagtta
ttattagcggccgtttcaagaatggttatgagccaagaaccgaacacttatgctttgaag
aataatttcaaatccaacatccaacaacagcaacaaaaaatttttggtactactttaaat
actactacaaccactaatccagctactgttaatggttctaacaacacaataggggtagca
tcaggaggaggaggaggagtaggaggaggagtaggagtagcatctagttcaggggaacct
ttcggtactttggtttacatgactaaagccgctttgattgcattaatgtcagtttctaaa
acaacaactcctaaaacaaacaatgatagcagtgccagtagtgtaaactccaattctaac
aataattccaattctacctctaacagcaccaccactactgccagtgttatttctacgaat
aacaacactaatggcaatacaaccaacatttccatgggaaatggtcaatttacaccttca
tccactcctggaacaccgactgttgaattggtgacaacgcctggtagtagcaacaacatc
aatttattattaatgcaacaaagaaggattgcccaatttaatatagacgatgacgacgaa
gaacaagaaaacagtgaaattgaaaagcccagtaattatgatgaccaattgtggcacggt
ttggatttatgcaatttgaagcttagcaagttgaatgatagattatttaaattttcgttt
ctaactaggttgtttttaaatggtaacaatttgaccgaattacccccaagtatcaaatcc
ttagttaatttacgcgttttagatttgtccaataatagattagagagtgtgcctcctgaa
ttagggatgttatttaacttaaaatacttgtatttatttgacaacagaattaagaatctt
ccatacgaatttggaaatttatttaatttacaatttctaggtttagaggggaacccattg
gatagcgacattatcaagatatatagtgaaaaaaacttgacgggactaattttttattta
cgagacaatgcgccagaagtggaattaaaacaagatcgaaaatttattgaaattaacact
gatggtgaaccaacatcaaatgtttacaattccgtcaatgaggctattgaacagttacct
ttgaagcgaacctcctttactttactatcttacaacaccttatgtcaacattatgccacg
cccaaaatgtatcgtttcaccccatcgtgggcactaaattgggactatagacgtgaaaaa
ctaaaggagcaaattatgagctacaaaaccgatattatttgtttacaggaggtagaaagc
aagacatttgatgatttttggagtccactaatggaaagggaaggttactcctgtatattc
cattccaagacaagagctagaactatgcaaagcaaagattccaagaaagttgatgggtgt
gcaattttttttaaaaaatcagagttcaaattgatttttaaagaattagtagattttagt
agtgtttggatgaatagtcctaaattttccaagactgctgactatattaaccgcgctatg
aataaagataatgtttctttatatactaagttacatcacatcaaatccggtgaaaacatc
tgggttgctacaactcacctacattgggatcctaaattcaatgatgtcaagactttccag
gttggggttcttcttgatcacttggagaaattagttagagaacagaaccatattactaca
ccaggtgattataaaaaaacaccaattattatctgtggtgatttcaattctcaaagaaat
agtgcagtctatgaattatttaatacgggctccgtcagtaatgaacatgaagacgtcaaa
ggtagagattacggtcatatgactaaaaataacttcgtgaacgatttccaattcaggtct
tgttatgattgtattggtgaattaccatttaccaatttttcacctacttttatagatgtt
attgattacatttggtattctccaaaatccttgagggttcgtggtgttttaggtgaaatt
gatgaagattatgtttcaaagtttattgcttttcccaatgccaaatttccaagtgaccat
attcctttggttggtagatttgagtttactggtaaaggtactgatcatgctggaggaagt
ccattttctgggtcaaatagtaggaaggtctaa
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