Saccharomycodes ludwigii: SCDLUD_001661
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Entry
SCDLUD_001661 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K13126
polyadenylate-binding protein
Organism
slud
Saccharomycodes ludwigii
Pathway
slud03015
mRNA surveillance pathway
slud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SCDLUD_001661
09123 Folding, sorting and degradation
03018 RNA degradation
SCDLUD_001661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slud03019
]
SCDLUD_001661
03041 Spliceosome [BR:
slud03041
]
SCDLUD_001661
Messenger RNA biogenesis [BR:
slud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
SCDLUD_001661
mRNA cycle factors
Stress granule specific factors
SCDLUD_001661
Spliceosome [BR:
slud03041
]
Complex C
Other components
Complex C specific factors
SCDLUD_001661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_10
RRM_occluded
RRM_RdRP1_2
YflT
DUF2800
GNAT_acetyltran
Motif
Other DBs
NCBI-GeneID:
70106983
NCBI-ProteinID:
XP_045935810
LinkDB
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Position
II:<844051..>845748
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AA seq
565 aa
AA seq
DB search
MSTTSDLTDKTVEQLEKLSINNGSETAPTTTSEDSNDMLTNPASLYVGELDPSVTEAVLY
DIFSPVGPVSSIRVCRDAISKNSLGYAYVNFQDYESGKRAIEQLNYAPINGRPCRIMWVQ
RDPSLRKRGAGNIFIKNLDPAIDNRALFDTFSAFGDILSCKISTDENGNSRGFGFVHFKE
ESDAKDAIEAINGMLLNGREVFVGPHVSRKERQTKLEELKTNFTNLYIKNIQQDVTLDEF
TKLFEKFGKTTSIVLAEDGEHRNKGFGFVNFENHEDAAKAVDELNGNEFHGLKLFVGRAQ
KRYERSQELRKQYELAKAEKMAKYRSVNLFVKNLADSIDDEKLVELFSPYGTITSTKLMR
DENGNSKGFGFVCFETPEEANRAIAEMSQRIVADKPLYVAIAQRKDERRSKLAQEFQAKN
NMRFFPPAGMPAQFGGVAPVMYNIYPGANGPVPPQMAGRFMQHPQMMNKQMSYGVPAPQQ
GFPPRNDFMMPQPTKQIIGEQLYEKVSKKTSGNEAAAGKITGMLLELPYQEVHQLLQDEG
FFEKQFADAKAAYENFSKEQANAAA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtccactacttctgatcttactgataaaaccgttgaacaattggaaaaattgtccatt
aataacggtagcgaaaccgccccaactactacttctgaagattccaatgatatgctaact
aacccagcttctttatatgttggtgaattggacccatctgtaactgaagctgttttatac
gatattttctctccagttggtccagtttcttccatccgtgtgtgccgtgatgctatttcc
aagaactccttgggttatgcttatgttaactttcaggattacgaatcgggtaaacgtgcc
attgaacaattgaactacgctccaattaatggtcgtccatgtcgtattatgtgggttcaa
cgtgatccatctttgagaaagagaggtgctggtaatattttcatcaagaatttggaccca
gctatcgacaatagggccttgtttgatactttctctgcttttggtgatattttatcttgc
aagatttccaccgatgaaaatggtaattcgagagggtttggttttgtgcacttcaaagaa
gaaagcgatgccaaagatgctattgaagctatcaacggtatgttgttaaatggcagagaa
gtttttgttggtcctcacgtctctagaaaagaacgtcaaactaaattggaagaattgaaa
actaatttcaccaacttgtatatcaaaaacatccaacaagacgttactctggatgaattt
actaaattatttgaaaaatttggtaagaccacttcgattgttttggccgaagatggcgaa
cacagaaacaagggatttgggtttgtcaactttgaaaatcatgaggatgctgcaaaggct
gttgatgaattgaatggaaacgaattccatggcttgaagttgtttgttggtcgtgctcaa
aagagatacgaacgttctcaagaattgagaaagcaatacgagctagctaaggccgaaaag
atggctaaatacagatctgtcaacttgtttgttaagaacttggctgattccattgatgat
gaaaagttggttgaattgttttctccatatggtaccatcacttctaccaaacttatgaga
gatgaaaacggtaattctaaagggttcggttttgtttgttttgaaactccagaagaagcc
aacagagccattgctgaaatgtctcagagaattgttgctgacaagccattgtatgttgcc
attgctcaaagaaaagatgaaagacgttccaaattggctcaagaattccaggctaaaaac
aacatgagattctttccaccagctggtatgccagcccaatttgggggtgtagctccagtt
atgtataatatttatccaggtgccaatggtcctgttccacctcaaatggctggcagattt
atgcaacaccctcagatgatgaacaaacaaatgtcatacggtgttccagctccccaacaa
ggttttccaccaagaaatgattttatgatgccacaaccaacaaagcaaatcattggtgaa
cagttgtatgaaaaggtttccaagaaaaccagtggcaatgaggctgccgcaggtaaaatt
actggtatgttattggaattgccataccaggaagttcatcaactgttgcaagatgaaggg
ttttttgaaaagcaatttgctgacgctaaagctgcctatgaaaatttctctaaggaacaa
gccaatgctgctgcctaa
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