Saccharomycodes ludwigii: SCDLUD_002121
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Entry
SCDLUD_002121 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
slud
Saccharomycodes ludwigii
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slud03019
]
SCDLUD_002121
03041 Spliceosome [BR:
slud03041
]
SCDLUD_002121
03036 Chromosome and associated proteins [BR:
slud03036
]
SCDLUD_002121
Enzymes [BR:
slud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCDLUD_002121
Messenger RNA biogenesis [BR:
slud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
SCDLUD_002121
mRNA cycle factors
Common to processing body (P body) and stress granule
SCDLUD_002121
Spliceosome [BR:
slud03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
SCDLUD_002121
Chromosome and associated proteins [BR:
slud03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
SCDLUD_002121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
70107438
NCBI-ProteinID:
XP_045936229
LinkDB
All DBs
Position
II:complement(2053679..2055580)
Genome browser
AA seq
633 aa
AA seq
DB search
MSKYVPPSKRNDSDAQSTQNSGYNGGRGGYNGGRGGYNSGRGGYNGGRGGYNSGRGGYSS
GRGGYNNGYNNGGRGGYGYRNNSDNTYFNPRFQTQNREYGRWSHGEHIPAEKNPAIEAKL
FGTAEEPVGQTSGINFDNYDDIPTEATGNDVPDEITEFTSPPLNELLLENIRLAHFTRPT
PVQKYSIPIVAAGRDLMACAQTGSGKTGGFLFPILSECFDKGPAPTPKADDGPYSGPKVT
YPTGLILAPTRELATQIYDEARKFCYRSWVKPCVVYGGANIETQIRNINQGCGLLVATPG
RLIDMIERGSINLANIKYLVLDEADRMLDMGFEPQIRNIVENSDMPGCENRQTLMFSATF
PEDIQQLAHDFLKDYIFCTIGRVGSTSENITQKILYVEEHDKQNALVELLDAEGPQLTLV
FVQTKRLADMLTDFLIISGYKATAIHGDRTQRERERALSAFKNGAANILVATAVAARGLD
IPNVKHVINYDLPADVDDYVHRIGRTGRAGNTGNATSFFNGENKKLAGDMVDLLEEAKQD
VPAFLISMSRQSGSKRGGFRGNNTRDFRNNSNYSRGGFSRNNNSRGNSGYGSNNYANNGG
WGSSSGSFGGNSNWGSSESNWSAPSSNNNKSWW
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaatacgttcctccttcaaaaagaaatgattctgatgctcaatccacgcagaac
tctggctacaacggtggcagaggtggttataacggtggtagaggtggctacaacagtggc
agaggtggttacaacggtggtagaggtggctacaacagtggcagaggtggctacagtagt
ggcagaggtggttacaacaacggctacaacaacggtggtagaggtggttatggttataga
aacaactccgataacacatactttaatccaagatttcaaacccagaatagagaatatggt
agatggtctcacggtgaacatattccagcggaaaaaaacccagctattgaagccaaattg
tttggtactgctgaagaaccagttggtcaaacctctggtattaattttgacaactatgat
gacatcccaactgaagccactggtaatgatgttccagatgaaatcactgaatttacttct
cccccattaaatgaattgttactagaaaatattcgtttggcacatttcactagaccaact
cctgtacaaaaatattccatcccaattgttgctgctggtagagatttaatggcttgtgcc
caaactggttccggtaagactggtgggtttttgttcccaattttaagtgagtgttttgat
aagggtcctgctcctactccaaaagctgatgacggtccatactctggtccaaaggtcact
tacccaacaggtttaattttggctccaacaagagaattggccacccaaatctatgatgaa
gctagaaagttttgttatagatcttgggtcaaaccatgtgttgtttatggtggtgctaac
atcgaaactcaaatcagaaacatcaatcaaggttgtggtttattagttgctactccaggt
cgtttaattgatatgattgaacgtgggagtattaatttagctaacatcaagtatttggtt
ttggatgaggcagatagaatgctagacatgggtttcgaacctcaaatcagaaacattgtt
gaaaactctgacatgccaggatgcgaaaaccgtcaaactttaatgttttctgctactttc
ccagaagatatccaacagttggctcatgatttcttaaaagattatattttctgtaccatt
ggtagagttggttctacctctgaaaatattacccaaaaaatattgtacgttgaagaacat
gacaaacaaaatgctttagttgaattactagatgccgaggggcctcaattgactttagtt
tttgttcaaactaaaagattagctgatatgctaactgactttttaatcattagtggttac
aaagcaactgcaattcacggtgaccgtactcaacgtgaacgtgaacgtgccttgagtgct
tttaaaaatggggctgccaatattttggttgccactgccgttgctgccagaggtttagat
attcctaatgtcaagcatgttattaactatgatttacctgctgatgttgacgattatgtt
catcgtattggtagaactggtcgtgctggtaacactggtaatgctacctctttctttaac
ggtgagaacaagaagcttgctggggatatggttgatttgttggaagaagctaaacaagat
gttccagcctttttgatctccatgtcaagacaaagtggtagtaaaagagggggattccgt
ggcaataataccagggatttccgtaacaattctaactattctagaggtggcttttccaga
aacaataactctagaggtaacagcggctacggtagtaataattatgctaacaatggtggc
tggggctcatcttctggttcctttggtggtaacagtaactggggctcctccgagtctaat
tggtctgctcctagctccaacaataacaaatcttggtggtga
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