Saccharomycodes ludwigii: SCDLUD_002183
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Entry
SCDLUD_002183 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K14284
nuclear RNA export factor
Organism
slud
Saccharomycodes ludwigii
Pathway
slud03008
Ribosome biogenesis in eukaryotes
slud03013
Nucleocytoplasmic transport
slud03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SCDLUD_002183
03015 mRNA surveillance pathway
SCDLUD_002183
03008 Ribosome biogenesis in eukaryotes
SCDLUD_002183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slud03019
]
SCDLUD_002183
03009 Ribosome biogenesis [BR:
slud03009
]
SCDLUD_002183
Messenger RNA biogenesis [BR:
slud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
SCDLUD_002183
mRNA cycle factors
Stress granule specific factors
SCDLUD_002183
Ribosome biogenesis [BR:
slud03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
SCDLUD_002183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
RRM_9
TAP_C
LRR_NXF1-5
LRR_9
LRR_4
Glutenin_hmw
Motif
Other DBs
NCBI-GeneID:
70107500
NCBI-ProteinID:
XP_045936291
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All DBs
Position
II:2180472..2182421
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AA seq
649 aa
AA seq
DB search
MINRFNNTNFHNPNNLSQLAQQNVNSNKVKISINGWQNATQNDVINFISRKTRIAVVDSY
IDGQLVYGFVNNITQANNLLNYNGIRFAGNALKFNIINDQNGTGVGTTNNTIKLLTEFLY
KRFNPQLKMLDLSALHQDPVLVSNGLFSSLSTQSKMFPALMKLAESESGKNPAFIIESIN
LSDNNLKDVNGLNSMALTFPTLKNLCLANNQISKFRSLENWKNKFKYLRELILTNNPITN
DLSYKNEMLRLFPRLILLDNVYVRDETKLNSILNLPFYKKQFFWENDQLGQYATDFISNF
LNLWDSNTRTQLLQLYTPQSQFSTSVDSSIPTSTTPNSDQDPSFGLYLPLSRNISKVSSS
KSRLERLNVGLEQIEKAFRSLPKTKHFLLESPHNYSVESWGFAPGFIITLHGFYEEVGKP
DLDRDLASNSNKSNNRNRRYNNNNNNNRLGKKAFDRVWLVIPQGNSVIVASDMLCVRAYV
EGSWVKSPPSQTKVQPQQQPLQAQQPLQVQQPLQVQQPLQVQQPLQAQQPLQVQQPLQVQ
QPLQVQQPLQVQQSGAILTPPTSAGTNMSNASANNIINTSTTTTLQIPPEIKSKLNMQQL
ILVNKIHLETKLNVQYTLMLCEQSGWNYDVAIRGFQSSINNIPREAYGM
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgataaatagattcaataataccaatttccataatcccaacaatttatcacaattggcc
caacaaaatgttaatagtaataaagtcaaaataagtataaatggctggcaaaatgctact
caaaatgacgtaattaattttatatctagaaaaacaagaattgctgttgttgattcatat
atcgatggccaattagtttatggctttgtaaataatattactcaggctaacaacttactt
aattacaatggtataagatttgccggcaatgcattaaagtttaatattattaacgaccaa
aatggtactggtgtcggtactactaataatactattaagctattaactgagtttttgtat
aaaaggtttaatccccaattaaaaatgttagatttaagtgcattacatcaagaccctgtt
ttagtatcaaatggtttattcagttctctatcgacccaatctaaaatgttccctgcttta
atgaaattagcagagagtgaaagcggtaaaaaccctgcttttattatagaaagcattaat
ttaagtgacaacaatttaaaggatgttaatgggttgaatagtatggctttaactttcccg
actttgaagaatttatgtttagccaataatcaaatcagtaaatttagaagtttagaaaat
tggaaaaacaaatttaaatacttgagggaattgattttaacgaataaccctattaccaac
gacttgagttataaaaacgaaatgttaagactcttcccccgtttgattttattggataac
gtatatgttagggacgaaactaaattgaattcaatactaaatttaccattttataaaaaa
caatttttttgggaaaacgatcaactaggtcaatatgcaactgattttatatccaacttt
ttgaatttatgggatagcaacacaagaacacagttattacaattatatactccgcaatca
caattttctacttctgttgattcttctatccccactagtaccactcctaattcagatcaa
gatccatcgtttggactttatttaccgttgtctagaaatatttctaaagtatctagttcg
aagtcaagacttgaaagattaaatgtcggcttagaacaaattgaaaaggcatttagatct
ttaccaaagacaaaacatttcttattagagagccctcataattattctgttgagtcgtgg
ggatttgctccgggatttattataactttgcatggattttatgaggaagtgggtaaacca
gatctggatagagatcttgcatctaatagcaataagtcaaacaatagaaatagaagatat
aataacaataataataacaatagattgggtaaaaaagcatttgacagagtttggttggtt
attccccaaggtaattctgtcatagttgcatcagatatgttatgtgttagagcatatgtt
gaaggttcatgggtcaaatcaccgccatcacaaacaaaagttcaaccacaacagcaacca
ttacaagctcaacaaccactacaagttcaacaaccattacaagttcaacaaccactacaa
gttcaacaaccactacaggctcaacaaccattacaagttcaacaaccattacaagttcaa
caaccattacaagttcaacaaccattacaagttcaacaatcaggggctatactgactcca
ccaacttcagctggtaccaatatgtctaatgcaagcgctaacaatattatcaatacaagt
acaacaacaacattacaaattcctcccgagattaaatccaaattaaacatgcaacaatta
attttggtgaataaaatacacttagaaaccaaattgaatgttcaatatactttaatgtta
tgtgagcaaagtggttggaattacgatgttgccattagaggatttcaatcaagtataaac
aacattccaagagaagcttatggcatgtag
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