Saccharomycodes ludwigii: SCDLUD_002651
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Entry
SCDLUD_002651 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
slud
Saccharomycodes ludwigii
Pathway
slud03013
Nucleocytoplasmic transport
slud03015
mRNA surveillance pathway
slud03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SCDLUD_002651
09122 Translation
03013 Nucleocytoplasmic transport
SCDLUD_002651
03015 mRNA surveillance pathway
SCDLUD_002651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slud03019
]
SCDLUD_002651
03041 Spliceosome [BR:
slud03041
]
SCDLUD_002651
Enzymes [BR:
slud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCDLUD_002651
Messenger RNA biogenesis [BR:
slud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SCDLUD_002651
Spliceosome [BR:
slud03041
]
Complex C
Other components
EJC/TREX
SCDLUD_002651
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SCDLUD_002651
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
Motif
Other DBs
NCBI-GeneID:
70107968
NCBI-ProteinID:
XP_045935101
LinkDB
All DBs
Position
III:complement(<915811..>917157)
Genome browser
AA seq
448 aa
AA seq
DB search
MSNEVEEDLLEYSDHEQEFQIPESKAATNGESSATVTNSKGEEKEGGNNEEGQKKGSYVG
IHSTGFKDFLLKPELSRAIVDCGFEHPSEVQQATIPQSIHGTDVLCQAKSGLGKTAVFVL
STLQQLDPVPGEVSVVVICHTRELAYQIRNEYLRFSKYMPDVKTAVFFGGTSMREDIDKL
SDKEKCPHIVVATPGRLKALVREKKIDLSHVKNFVVDECDKVLEKPDMRQDVQDIFRATP
RDKQVMMFTATLNEEMKPVCRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLA
QLLDDLEFNQVIIFVKSTNRANELTKLLNASNFPAITVHSNMKQEDRILRYKAFKEFEKR
ICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISFISSAEDEEV
LEKIQSRFDVKIAPFPEEGVDPSTYLNN
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacgaagttgaagaagatttattagaatattctgatcacgaacaagaatttcaa
attccagaatccaaagccgcaactaacggtgaatcttctgccactgttactaactccaag
ggcgaggaaaaggaaggtggaaacaatgaggaaggtcaaaaaaagggttcttatgtaggt
attcattctactggttttaaggatttcctattgaaaccagaattatccagagccattgta
gattgtggttttgaacatccaagtgaagttcaacaagccactattccccaatcaattcat
ggtactgatgttttatgtcaagcaaaatccggtctaggtaagactgccgtttttgttttg
tctactctacaacaattagatccagtaccaggcgaggttagtgtcgttgttatttgtcat
acaagagaattagcttatcaaattcgtaatgaatatttgagattttccaagtacatgccc
gatgttaaaaccgctgttttttttggcggtacttcaatgagggaagatattgacaagtta
tctgataaagaaaagtgtccacacattgttgttgccactccaggtcgtttaaaagctttg
gttagagagaagaaaattgatttgagccacgtgaagaattttgttgttgacgaatgtgat
aaagttttggaaaaaccagacatgagacaagacgttcaagatatttttagggctactcca
agagataaacaagttatgatgtttactgctactttaaacgaagaaatgaaaccagtatgt
agacgttttttgcaaaacccactagaaatctttgttgatgacgaggccaaattgacttta
cacggtctacaacaatattatatcaaattagaagaacgtgaaaaaaacagaaagttggcc
caattgttggatgacttggaatttaaccaagttattatctttgtcaaatctaccaataga
gctaatgagttgaccaaactattgaacgcttctaattttccagctataactgtccacagt
aatatgaaacaagaagatcgtattctacgttataaagcttttaaagaatttgaaaaacgt
atttgtgtttccacagatgtctttggtagaggtattgatattgaaagaattaatttagct
atcaattatgacttaccaaacgaagctgatcaatatttgcatcgtgttggtagagctggt
agatttggtaccaaggggttggctatttcctttatttcttctgcagaggatgaagaagtt
ttggaaaagatccaaagtcgatttgatgttaaaattgcgccattcccagaagaaggtgtt
gacccatcaacatatttaaataattag
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