Saccharomycodes ludwigii: SCDLUD_003035
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Entry
SCDLUD_003035 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
slud
Saccharomycodes ludwigii
Pathway
slud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCDLUD_003035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slud03019
]
SCDLUD_003035
Messenger RNA biogenesis [BR:
slud03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SCDLUD_003035
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SCDLUD_003035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
CSL4_N
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
70108352
NCBI-ProteinID:
XP_045935471
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Position
III:complement(1770012..1770932)
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AA seq
306 aa
AA seq
DB search
MLDSSRYPEKVLPGDLISPLYDIDNNNEKIVYSFHPGPGTTITKYKINSQEHKVLIATLK
GFVHFEELVKTNIDSEGKESEKKEENDTENKNKLADELEAPEVNSDRIIKKYTVIVSKEK
KNEMMQDPNLQEGQQDEVNNDFANNLPKEGDIVLCKVTRISAQKANVEILVVENNNCLKD
SGVGTNGAGVSSVTGGSGAVTFFISQASSDLGETFKGVIRSQDVRATERDSVKITECFKP
GDIVRCKVLSLGDGNNYYLTTAKNYLGVVFAKSLGGAGELMYAIDWKTMIAPTSQVLEQR
KCAKPF
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgttagacagtagtagatatccagaaaaggttttgccaggtgatttaatatcaccatta
tatgatatcgataataataatgaaaaaattgtatacagttttcacccaggtccaggaact
actataacaaaatataaaataaacagccaagaacataaggtcttgattgcaacattgaaa
ggttttgttcatttcgaagaactagtaaagactaatatagattccgaaggaaaagaatca
gaaaaaaaagaagagaatgatacagagaataagaataaacttgctgatgaattagaggca
ccagaagtaaattctgatagaataattaaaaaatataccgttattgtatctaaagaaaaa
aaaaacgaaatgatgcaagatcccaacttacaagaaggacaacaagatgaggtaaataac
gattttgctaataacttacccaaggaaggggatattgtgttgtgtaaagtaacaagaata
tctgcacagaaggctaatgtcgaaattttagtggtagagaacaacaattgcttgaaagat
tctggtgttggtacaaatggtgctggtgtatcttcagtcactggcggttcgggagctgtt
acatttttcatatcacaagcctcctctgatttgggggaaacgtttaaaggggttataaga
tcacaagatgttagagctactgaaagagattcggtgaaaattacggaatgtttcaaacca
ggagatatagtgcgttgcaaagttttatccctaggggatggtaacaattattatttaact
actgctaaaaattatttaggggtggtatttgccaaatcgcttggtggtgcaggagaattg
atgtatgcgattgactggaaaacaatgatagcaccaacctcacaagtattagaacaacgt
aaatgtgctaaaccgttttga
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