Saccharomycodes ludwigii: SCDLUD_003171
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Entry
SCDLUD_003171 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
slud
Saccharomycodes ludwigii
Pathway
slud03013
Nucleocytoplasmic transport
slud03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SCDLUD_003171
03015 mRNA surveillance pathway
SCDLUD_003171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slud03019
]
SCDLUD_003171
Enzymes [BR:
slud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCDLUD_003171
Messenger RNA biogenesis [BR:
slud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
SCDLUD_003171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_30
AAA_22
Motif
Other DBs
NCBI-GeneID:
70108488
NCBI-ProteinID:
XP_045934133
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All DBs
Position
IV:<252821..>254272
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AA seq
483 aa
AA seq
DB search
MATIEKDTPTKSNIDKKDAADLLAGLNINKAKTEESSSTKPPEEQQDKQDTPVVDSSLVK
SEYEVKVKLADLQADPNSPLYSVKSFEELGLKAELLKGLYAMKFSKPSKIQEKALPLLLS
TPSKNMIAQSQSGTGKTAAFSLTMLSKVDESIKQPQCICLAPSRELARQTLEVIVEMGKF
TKISTQLIVPDSYTKNKHITEQIIVGTPGTILDLIRRKMISLKNIKVFVLDEADNMLELS
NLGDQCVRIKKLLPSSTQLILFSATFDDKVRAYAHKVVPNANSLELQKNEVNVSAIKQLY
IKCGNAEEKFEKLSELYGLLTIGSSIIFVAQKKTANELYYKLKNEGHQVSILHGDLVSTD
RDQLIDDFRNGRSKVLITTNVLSRGIDIPTVSMVVNYDLPTITTTTRNGGKQQKCDPSTY
IHRIGRTGRFGRKGVAISFVVENTKDMEILGNIQKYFGNIEMTELPTDDWDEVEKIVKKV
LKE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggccactatagaaaaggatactccaactaaaagtaacattgataaaaaagatgctgcg
gatttgttagcaggactaaatattaacaaggccaaaacagaagaatctagcagtactaaa
cctcctgaagaacagcaggataaacaagatactccagttgtagattcgagcttggttaaa
tctgagtacgaggttaaagtcaaattggccgatttacaagcagacccaaattctccatta
tacagtgttaagagttttgaagaattggggttaaaggcagaattactaaaggggttgtat
gctatgaagttttccaagccaagtaaaatccaagagaaagcattgccattgttattatct
acaccaagtaaaaatatgattgctcaatcccaaagtggtactggtaaaacagcagctttt
tcattgaccatgttgagtaaagttgatgagtctattaagcaaccacaatgtatatgtttg
gcaccatccagagagttggctagacagactttggaagtgattgtagaaatggggaaattt
accaagattagtacgcaattgattgttcctgattcttacactaagaacaagcatattact
gagcaaataatagttggtacccctgggactattttggatttgattagaagaaaaatgatt
tctttgaaaaacataaaagtttttgttttggatgaggctgacaatatgttggaattatcg
aatttaggggaccaatgtgttaggattaagaaattgttgccttccagtactcagttgatt
ttgttttctgcaacatttgatgacaaggttagagcatatgcgcataaggtagtacccaac
gctaactctttagaattacaaaaaaatgaggttaacgttagtgcaattaaacaattgtac
attaagtgtgggaacgctgaggaaaaatttgaaaaattgagtgagttgtacggcttattg
actattggttcatcgattatttttgtagcacagaagaagacagcaaatgagctatattac
aagttgaaaaacgagggccaccaagtttcgatattgcacggtgacttagttagtactgat
agagaccagttgatcgatgactttagaaatggacggagtaaagtgttaataaccaccaat
gtgttatcaagagggattgacattccaacggtttctatggtggttaattacgatttacca
acaataaccacaacgactaggaatggtggtaaacaacaaaagtgtgatccgtctacctat
attcataggattggtagaactggtagatttggcagaaagggggttgctatatcgtttgtt
gttgagaacacaaaggacatggaaatattgggaaatattcagaaatattttggcaacatt
gagatgaccgaattgcccaccgatgattgggatgaagttgaaaagatagttaaaaaagtg
ttaaaggagtga
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