KEGG   Saccharomycodes ludwigii: SCDLUD_003238
Entry
SCDLUD_003238     CDS       T08289                                 
Name
(RefSeq) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
slud  Saccharomycodes ludwigii
Pathway
slud03013  Nucleocytoplasmic transport
slud03015  mRNA surveillance pathway
slud03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:slud00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SCDLUD_003238
  09122 Translation
   03013 Nucleocytoplasmic transport
    SCDLUD_003238
   03015 mRNA surveillance pathway
    SCDLUD_003238
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slud03019]
    SCDLUD_003238
   03041 Spliceosome [BR:slud03041]
    SCDLUD_003238
Messenger RNA biogenesis [BR:slud03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     SCDLUD_003238
    TREX complex
     SCDLUD_003238
Spliceosome [BR:slud03041]
 Complex C
  Other components
   EJC/TREX
    SCDLUD_003238
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    SCDLUD_003238
SSDB
Motif
Pfam: RRM_1 RRM_PARP14_3 FoP_duplication RRM_RdRP1_2 RRM_3 RRM_10 RRM_occluded RBD_DEAH11
Other DBs
NCBI-GeneID: 70108555
NCBI-ProteinID: XP_045934199
LinkDB
Position
IV:complement(<387548..>389702)
AA seq 252 aa
MSANLDKSLDEIIDSKRRVSASTKRNVPRRGAPGPRRGAPGPRRVSKQVNDRRRVGGRPR
IPGAAVNLPPSSLLDMAYSTRVSVEGLPKDISQDSIKEFFQTAVGGVQRVLLSYNEKGQS
MGMATLTFTSNEKARKAVTTYNNSPIDGGKSRLKVQMIIDPTKKPLASRIGGAGAIGPVS
RNVSNRGKLSSRLNRNGPRNNNMNNNNNNNNNGPKRSSRPPKRGNVNRGPKNEGKKSLEE
LDKEMAAYFDKN
NT seq 759 nt   +upstreamnt  +downstreamnt
atgtccgctaacttagataaatcattagatgagattattgattccaaaaggagagtctct
gctagtacaaaaagaaatgtaccaagaaggggtgctccaggtccaagaagaggtgctcca
ggtccaagaagagtttccaaacaggtgaatgatagacgtcgtgtgggtggcagaccaaga
attccgggtgctgctgtcaatttaccaccttcttccttattagatatggcttattctacc
agagtttctgttgaaggtttgccaaaagacatttctcaagattctattaaagaatttttt
caaactgctgtcggtggtgttcaaagagttttgttgagttataacgaaaagggacaatct
atgggtatggctactcttacctttactagcaatgagaaagctagaaaagcggttactact
tacaataattctccaattgatggaggtaagtccagattaaaagtacaaatgattattgac
ccaactaaaaaaccactagccagcagaattggtggagctggtgctattggccctgtttct
aggaacgttagtaatagaggtaagttatcttcaagattgaatcgtaatggtcccagaaat
aacaatatgaataataataataataataacaataatggtccaaaaagatctagccgtcct
ccaaaaaggggtaacgttaaccgtggtccaaaaaatgaaggtaagaaaagtttagaagaa
ttggacaaagaaatggctgcttatttcgataagaattag

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