Saccharomycodes ludwigii: SCDLUD_003238
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Entry
SCDLUD_003238 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K12881
THO complex subunit 4
Organism
slud
Saccharomycodes ludwigii
Pathway
slud03013
Nucleocytoplasmic transport
slud03015
mRNA surveillance pathway
slud03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SCDLUD_003238
09122 Translation
03013 Nucleocytoplasmic transport
SCDLUD_003238
03015 mRNA surveillance pathway
SCDLUD_003238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slud03019
]
SCDLUD_003238
03041 Spliceosome [BR:
slud03041
]
SCDLUD_003238
Messenger RNA biogenesis [BR:
slud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SCDLUD_003238
TREX complex
SCDLUD_003238
Spliceosome [BR:
slud03041
]
Complex C
Other components
EJC/TREX
SCDLUD_003238
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SCDLUD_003238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
FoP_duplication
RRM_RdRP1_2
RRM_3
RRM_10
RRM_occluded
RBD_DEAH11
Motif
Other DBs
NCBI-GeneID:
70108555
NCBI-ProteinID:
XP_045934199
LinkDB
All DBs
Position
IV:complement(<387548..>389702)
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AA seq
252 aa
AA seq
DB search
MSANLDKSLDEIIDSKRRVSASTKRNVPRRGAPGPRRGAPGPRRVSKQVNDRRRVGGRPR
IPGAAVNLPPSSLLDMAYSTRVSVEGLPKDISQDSIKEFFQTAVGGVQRVLLSYNEKGQS
MGMATLTFTSNEKARKAVTTYNNSPIDGGKSRLKVQMIIDPTKKPLASRIGGAGAIGPVS
RNVSNRGKLSSRLNRNGPRNNNMNNNNNNNNNGPKRSSRPPKRGNVNRGPKNEGKKSLEE
LDKEMAAYFDKN
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctaacttagataaatcattagatgagattattgattccaaaaggagagtctct
gctagtacaaaaagaaatgtaccaagaaggggtgctccaggtccaagaagaggtgctcca
ggtccaagaagagtttccaaacaggtgaatgatagacgtcgtgtgggtggcagaccaaga
attccgggtgctgctgtcaatttaccaccttcttccttattagatatggcttattctacc
agagtttctgttgaaggtttgccaaaagacatttctcaagattctattaaagaatttttt
caaactgctgtcggtggtgttcaaagagttttgttgagttataacgaaaagggacaatct
atgggtatggctactcttacctttactagcaatgagaaagctagaaaagcggttactact
tacaataattctccaattgatggaggtaagtccagattaaaagtacaaatgattattgac
ccaactaaaaaaccactagccagcagaattggtggagctggtgctattggccctgtttct
aggaacgttagtaatagaggtaagttatcttcaagattgaatcgtaatggtcccagaaat
aacaatatgaataataataataataataacaataatggtccaaaaagatctagccgtcct
ccaaaaaggggtaacgttaaccgtggtccaaaaaatgaaggtaagaaaagtttagaagaa
ttggacaaagaaatggctgcttatttcgataagaattag
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