Saccharomycodes ludwigii: SCDLUD_003572
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Entry
SCDLUD_003572 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
slud
Saccharomycodes ludwigii
Pathway
slud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCDLUD_003572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slud03019
]
SCDLUD_003572
03041 Spliceosome [BR:
slud03041
]
SCDLUD_003572
03009 Ribosome biogenesis [BR:
slud03009
]
SCDLUD_003572
03016 Transfer RNA biogenesis [BR:
slud03016
]
SCDLUD_003572
Enzymes [BR:
slud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SCDLUD_003572
Messenger RNA biogenesis [BR:
slud03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SCDLUD_003572
Spliceosome [BR:
slud03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SCDLUD_003572
Complex C
U4/U6.U5 tri-SnRNP related factors
SCDLUD_003572
Ribosome biogenesis [BR:
slud03009
]
Eukaryotic type
Pre-60S particles
Helicases
SCDLUD_003572
Transfer RNA biogenesis [BR:
slud03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SCDLUD_003572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Helicase_dom4_arc
YodE
AAA_22
DUF4047
Motif
Other DBs
NCBI-GeneID:
70108889
NCBI-ProteinID:
XP_045934513
LinkDB
All DBs
Position
IV:1133097..1136345
Genome browser
AA seq
1082 aa
AA seq
DB search
MSSNDLFDVFGENPLNTPPLPIDNEPEETIENKNNESSNKRKNVDDIDASTNKNKNDSST
KDSLPPQSNKKSKRFEKKLIDKKENKKEIQPVVTDSFEQEASREVKASSGLTNKPTTAVE
DDGKVKLSHQVRHQVALPPNYDYKPIGEHKRVNEARTYPFTLDPFQDTAISCIDRNESVL
VSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI
NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVH
YVFLSATIPNAMEFAEWICMIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIYLVVDEKSTF
REENFQRAMATISSGDDPADSKGSKSGKSFKGGASKGDAKADIYKIVKMIWMKKYNPVIV
FSFSKRDCEELALKMSKLDFNSDDEKDALTKIFNNAIDLLPEQDRELPQIKHILPLLRRG
IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKQFRW
VSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMIL
NLMRVEGISPEFMLEHSFYQFQNAASVPVMEKKLKVLEEQNSNLEIEDETNIKSYYDLKQ
TLNGYYNDVRLITTHPAHILSYLQPGRLLHIKINNTNDYGWGCVIDFVKRTNKRDPNVTF
TDHESYIVNVLVNTMYADSPVTLIKPFNPNFPEGIRPASPGEKSVVCIIPITLNSISEIG
KLRVHVPKDVKSTKQRETMGKMLSEANRRLNGSIPLLDPVKGMKIEDEDFLRLLKKIEIL
TQKLTSNPLAHSVRLNEIYDKYKKKVELNDSIKALKSKIRETQAVIQLDDLRRRKRVLRR
LGFCTSEDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKE
APRLKPELGEPLKAMRDVASKIAKIMKDSKIEIVEKDYVEGFRHELMEVVYEWCKGASFV
QICKMTDVYEGSLIRMFKRLEEMIKELIEVSNVIGNNDLREKMEAALNMIHRDLVSAGSL
YL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgagttccaatgatttgtttgatgtttttggtgaaaatcctctgaacactccaccctta
ccaattgacaatgaaccagaagaaaccatcgagaataagaataatgaatcttcaaacaaa
cgtaagaatgtagatgacattgacgcatcaaccaataaaaataaaaatgactcaagtact
aaagactcgttgcctccacaatccaacaaaaagtctaaacgattcgaaaaaaaattgatt
gataaaaaggaaaacaaaaaagaaatacaacctgttgttaccgattcctttgaacaagaa
gccagtagagaagtaaaggcatcttccggtctaaccaataaaccgacaactgccgtagaa
gatgatggaaaggttaaattatctcaccaagttagacatcaggttgcattaccacccaat
tatgattataaacctattggcgaacacaaaagggttaatgaggctcgtacttaccctttc
acgttagatcctttccaagatactgcaatttcttgtattgatagaaatgaatccgttttg
gtttccgcacatacatctgctggtaaaacagttgttgcagaatacgccatcgctcaatcc
ctaagagacaaacaaagagtcatatatacttctccaatcaaggcgttatcaaatcaaaag
tatagagaattacttgcagagtttggagatgttggtttaatgaccggtgacattacaatt
aatccggatgccggctgtctagtaatgactacagaaattttaagaagtatgttgtatcgt
ggtagtgaagttatgagagaagttgcctgggttatttttgacgaagtccattatatgcga
gacaaagagcgtggggttgtttgggaagaaactatcattctattaccagacaaagttcat
tatgtatttttatctgctaccattccaaatgcaatggaatttgccgagtggatttgtatg
atacactcccaaccttgtcatattgtgtatactgattttagacctacacctttacaacat
tatttatttccagcacacggtgatggtatttatttggttgtggatgaaaaaagtaccttt
agagaggaaaacttccagagagcaatggccactataagctcgggcgatgatccagctgat
tcaaagggaagtaagtctgggaaatcgtttaaaggtggtgcttcaaagggtgacgcgaaa
gcagatatttataagattgttaaaatgatttggatgaaaaagtataatccagtcattgtc
ttttccttcagcaaacgtgattgtgaagaactagctttaaagatgtcaaaattagatttt
aacagtgatgatgaaaaagatgctttgaccaaaatttttaataacgctattgatttgcta
ccggaacaggatagagaattgcctcaaattaagcatattttaccattattaagaagaggt
attggtattcatcattccggattgttgcccattctaaaagaggttattgaaattttattt
caagaggggtttttgaaagtcttgtttgcgacagaaacgttttctattgggttgaatatg
ccagctaagacagtagttttcacaagcgtcagaaaatgggatggtaagcagtttcgttgg
gtttctggtggtgaatacatccaaatgtctggtcgtgccggtcgtcgtggcttagatgac
cgtggtattgttatcatgatgatagacgaaaagatggagcctcaagttgccaagggcatg
gttaagggccaagctgatagattagattctgcctttcatttgggttataatatgattttg
aatttgatgagagtcgagggcatttctcccgaatttatgttagaacattcattttatcag
tttcagaacgctgcatcagtccctgtcatggaaaagaagttgaaagttttggaagaacaa
aacagtaaccttgaaatagaagacgaaactaatataaaatcatactatgatttaaagcaa
actttgaatggttattacaatgatgttcgtttaatcacaacacatccagctcatatttta
agttatttacaaccaggcagacttttacatattaaaattaataacactaatgattacggt
tggggatgtgttattgactttgttaaaagaaccaataaaagagaccctaatgttacattt
actgatcatgaatcttacatagtaaatgttttggttaatactatgtatgctgatagccca
gttactttaattaaacccttcaatcctaatttcccagaaggcatcagacctgcttcaccg
ggcgaaaaatctgttgtttgtatcattccaatcaccttgaattctataagtgaaattggc
aaattaagagtccatgttccaaaagatgtcaaatctacaaaacaaagagaaacaatgggg
aaaatgctatctgaagctaatcgtagattgaatggtagtataccactcttggacccagta
aagggtatgaagattgaagatgaagattttttgagattattaaaaaaaattgaaatctta
acacagaagttaacctccaatccgctagctcactccgtgaggttgaatgaaatctatgac
aagtataaaaagaaagttgaattgaacgattctattaaagcattaaagagtaaaattaga
gaaacccaagcagttattcaattagatgatttgcgtcgccgtaaaagggttttgcgtagg
ctaggcttctgtacttctgaggacattattgaattgaaaggtagagtggcttgtgaaatt
tcaagcggtgatgaattgttgctaacagaattgatcttcaacggtaatttcaatgaatta
aaaccagaacaagcggctgctcttctttcatgttttgccttccaagaacgttgtaaagaa
gcaccaagattgaaacctgaattgggcgagccgttaaaagccatgagagatgttgctagt
aaaattgccaagattatgaaagattctaagattgaaattgtggaaaaggactatgttgaa
ggcttcagacatgaactaatggaagttgtttacgagtggtgcaaaggtgcatcattcgta
caaatttgtaagatgacagatgtctatgagggttcattgattagaatgtttaagagatta
gaagagatgataaaagaattgattgaagtgtccaatgttattggtaataatgatttgagg
gagaaaatggaggctgctttgaatatgatacatagagatttagtttctgctggttcctta
tatttgtag
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integrated database retrieval system
