Saccharomycodes ludwigii: SCDLUD_003613
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Entry
SCDLUD_003613 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
slud
Saccharomycodes ludwigii
Pathway
slud03013
Nucleocytoplasmic transport
slud03015
mRNA surveillance pathway
slud03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SCDLUD_003613
09122 Translation
03013 Nucleocytoplasmic transport
SCDLUD_003613
03015 mRNA surveillance pathway
SCDLUD_003613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slud03019
]
SCDLUD_003613
03041 Spliceosome [BR:
slud03041
]
SCDLUD_003613
03009 Ribosome biogenesis [BR:
slud03009
]
SCDLUD_003613
03012 Translation factors [BR:
slud03012
]
SCDLUD_003613
Enzymes [BR:
slud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCDLUD_003613
Messenger RNA biogenesis [BR:
slud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SCDLUD_003613
mRNA cycle factors
Stress granule specific factors
SCDLUD_003613
Spliceosome [BR:
slud03041
]
Complex C
Other components
EJC/TREX
SCDLUD_003613
Ribosome biogenesis [BR:
slud03009
]
Eukaryotic type
90S particles
Helicases
SCDLUD_003613
Translation factors [BR:
slud03012
]
Eukaryotic type
Initiation factors
eIF-4
SCDLUD_003613
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
AAA_30
UvrD-helicase
CobA_CobO_BtuR
Helicase_C_2
NAT10_TcmA_helicase
TniB
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
70108930
NCBI-ProteinID:
XP_045934553
LinkDB
All DBs
Position
IV:complement(<1234790..>1236022)
Genome browser
AA seq
410 aa
AA seq
DB search
MSVPFNRELDAKIKFKKFKSATKNKALKVSPTFESMNLKPQLLRGIYSFGFEAPSAIQSR
AITQIISGKDVIAQAQSGTGKTATFAISMLQVIDTSIKDTQTIILSPTRELATQICTVVG
NLGDYMNVKTMALTGGKLVSGDLKKLSGGTGGVHIVSGTPGRCLDMIKRQVLSTRKIKML
VLDEADELLSETLGFKQQIYDIFAKLPTTVQVIVVSATMSKDILEITKKFISSDVVKILV
KQDEISLDGIKQYHVNVGKEEWKFDTLCDLYDSLTINQCVIFCNTKKKVDWLTQQMLKNS
FSVSSMHGDMKQEERDRVMNDFRSGNSRVLISTDVWARGIDVQQISLVINYDLPEITENY
IHRIGRSGRFGRKGVAINFVTKEDISKLRQIERQYSVKIKPMPANIEELS
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcccatttaatagagaactggatgctaaaataaaattcaagaaatttaaatcg
gctactaaaaataaagctttaaaagtcagtcccacttttgaaagtatgaatttaaaacca
caactattgcgtggtatatatagtttcggctttgaagccccttcagcaattcaatctagg
gcaatcactcaaattatctcaggtaaagatgtaatagcacaagcacaatcaggtactggt
aaaactgcgacatttgccattagtatgttacaagtcatagacacttcaattaaagataca
caaacaattattttatccccaactagggaactagccacgcaaatttgtacagttgttggc
aatttgggtgattacatgaatgtcaaaactatggcattaacaggcgggaaattagtttct
ggagacttgaaaaaattatctggaggcactggtggtgtgcatatagttagtggtacccct
ggaagatgtttggatatgattaaaagacaagtcttatcaacaagaaaaattaaaatgttg
gttttggatgaagcagacgaattattaagcgaaacattggggtttaagcagcagatatat
gatatttttgccaaattaccaaccaccgtacaggttattgttgtatctgccacaatgagt
aaagatatattagaaattactaagaaatttataagtagtgatgtggtaaaaatcttagtt
aaacaagatgagattagtttggatggtatcaaacaatatcatgtcaatgtggggaaagaa
gaatggaagtttgatacattgtgtgatttgtatgattctctaacgattaatcagtgtgtt
atattttgcaacacaaagaaaaaggttgattggttaacgcaacaaatgctaaagaatagt
ttttctgtaagttcaatgcacggtgatatgaaacaagaagaaagagatcgtgttatgaat
gattttagaagcggcaactcgagagtattgatatcaacggatgtatgggcccgtggtatt
gatgtacaacaaatttctttagttataaattatgacttaccagaaataacggaaaactac
atacatcgtattggtagaagcggaagatttggtcgtaagggtgttgctattaattttgtg
acgaaggaagatatatccaaactgagacaaattgaaagacaatactctgttaaaattaag
cctatgcctgccaacattgaagaattgtcttag
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