Saccharomycodes ludwigii: SCDLUD_004116 Help Entry SCDLUD_004116     CDS       T08289                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism slud  Saccharomycodes ludwigii Pathway slud03013   Nucleocytoplasmic transport slud03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:slud00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     SCDLUD_004116    03015 mRNA surveillance pathway     SCDLUD_004116  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:slud03019]     SCDLUD_004116 Enzymes [BR:slud01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      SCDLUD_004116     5.6.2.5  RNA 5'-3' helicase      SCDLUD_004116 Messenger RNA biogenesis [BR:slud03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      SCDLUD_004116    mRNA cycle factors     Common to processing body (P body) and stress granule      SCDLUD_004116 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII Viral_helicase1 NPHP3_N DEAD SLFN-g3_helicase Helicase_RecD Nop14 AAA_22 PhoH nSTAND3 Redoxin AAA_16 Mg_chelatase AAA Motif Other DBs NCBI-GeneID:  70109433 NCBI-ProteinID:  XP_045933756 LinkDB All DBs Position V:complement(760147..763290) Genome browser AA seq 1047 aa AA seqDB search MPEDELENICAKSNNDEVVSSNNTESNVIIKSIYNSIDANNNKNDKSNNETIDKEEEKEE EEEEEEEEEEEKEEKEEEKEEEDDDDDDDEEEEEEEEEEEEEEEEEEDDDDDDDDEEEEE DDDEELFLSDPHIRTDYCAYCGIDAPECLIKCNMCNKWFCNSKQKSASSHIVNHLVLTHH NHVSLHENSDLGDTVLECYNCGCKNCFILGFVSAKSEAVVVILCRLPCAQQKNLNWVTDQ WQPLIENKQFLSWIAEPPNEEQILKAKLITPSQIAKLEAKWRSNKDATINDLDLPDDSEE EVLPILMRYSDAYQYQRSFAPLVKLEADYDKQLKESQALEHISVTWSTDGARTLASFALS TYESNALKVAVGDEMILRYSGLQHTDWEGRGYIIRLPNSMKDEFTLELKPSASSSKQTPT SLNTGFTAEFVWKGTSYDRMQDAMKKFAIDKKSISGFLYYNILGHDIPSIKYEVDLPEQF SIPNFAQLNISQAHAVRHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKLHKERILVCAPS NVAVDHLASKLRDLGLKVVRLTAKSREDVESTVSELGLHNLVLKSADGSFKKLLDKKRNG EELSAKEAKKFVVNVRKYEAGILKKADVVCCTCVGAGDKRIDFKFKTVLIDESTQATEPE CLIPIVKGAKQVILVGDHQQLGPVILDRKAGDAGLKQSLFERLITLGHVPFRLEVQYRMN PHLSEFPSNMFYDGSLQNGVTMEQRLLPNSNFPWPIHDVPMMFWANYGREEISSNGTSYL NRIEAMNCERIITRLFKDGIKPEQIGVITPYEGQRAYIVQYMQMNGSMDKDAYLSVEVSS VDAFQGREKDFIILSCVRANDQQTIGFLSDPRRLNVALTRSKYGLIILGNPASLSRNILW NNLLVHFRSKGCLVEGSLDNLQMCAVQLMKPVQNNNKKNNANNNNNTNNITNKGNSYIND FTNNYNSSIHNMNNFINNANNNYYNNNINSSSSHFDTQSIVSFNQVQDPSSLFVQDTDLS SFLHKQFMNNDGPTDYVQEAFSNLNVK NT seq 3144 nt NT seq  +upstreamnt  +downstreamnt atgccagaagacgaattagagaatatctgtgcgaaaagcaacaatgatgaagttgtatct tctaataatactgaatctaatgttattattaaatctatttataattccatagatgctaac aataataagaatgacaagagtaacaatgaaaccatcgataaagaagaagaaaaagaagaa gaagaagaagaagaagaagaagaagaagaagaaaaagaagaaaaagaagaagaaaaagaa gaagaagacgacgacgacgacgacgacgaagaagaagaagaagaagaagaagaagaagaa gaagaagaagaagaagaagaagacgacgacgacgacgacgacgatgaagaagaagaagaa gatgacgacgaagaattgtttttgtcagatcctcatattcgtacagattattgtgcctac tgtggtattgatgcaccggaatgcttaattaaatgtaatatgtgcaacaagtggttttgc aattccaaacagaaatcagctagttctcacatagtgaaccacttagtattaacacaccat aatcatgtttctttacacgaaaattccgacttgggcgatacagtattagaatgttacaac tgtggttgtaaaaattgttttattttagggtttgtttctgctaaaagtgaggctgttgtc gttatattgtgcaggttgccctgtgcccagcaaaaaaatttgaattgggtcactgaccag tggcaaccattaattgaaaataagcagtttttgtcttggattgctgagccgcctaacgag gagcaaatactaaaggcaaagttaataactccaagtcaaattgctaaactagaagccaaa tggagatccaataaagatgccactattaatgatttagatctacctgatgactcggaagag gaagttttacctatcctgatgagatattcagatgcatatcagtatcaaaggtcatttgct cccctagttaaattagaagctgattatgacaaacaattaaaggaatcacaagctctagaa cacatttcggtaacctggtccaccgatggtgctagaaccttggccagttttgcgttatcc acctatgaatcaaatgcgttaaaagttgctgttggagatgaaatgattctaaggtattca ggtttgcaacacacagattgggaaggtagaggctatattatccgattaccaaacagtatg aaagatgaatttaccttggaactaaagccttctgcgtcatcttccaaacaaactccgact tctttaaataccgggttcactgctgaatttgtttggaagggcacatcttatgataggatg caagatgccatgaaaaaatttgccattgataaaaaatcgatatccgggtttctatattat aatattttaggccatgacattccatcaataaagtatgaagttgatttaccggaacaattt tctattcctaattttgctcaactaaacatatctcaagctcatgccgttagacatgttttg caaagaccgctatcactaatccaaggacctcctggtactggtaagactgtaacatctgct acaattgtttatcatttgtctaaattacacaaagaaagaattttggtttgcgctccctcc aatgttgctgtggaccacttagcttctaaattgagggatttgggattaaaagttgttaga ttaactgctaaaagtagggaagatgttgaaagtacggtttctgaattgggcttgcataat ttagtgttgaaatcggcggatggttcattcaagaaattattggacaaaaaacgcaacggc gaggagctatctgccaaggaggccaagaaatttgttgtcaatgtaagaaaatacgaagca gggattttgaaaaaagctgatgttgtttgttgtacttgtgttggtgctggcgataagcgg attgattttaaattcaagaccgttttaattgatgagagtacccaggctacagaacctgaa tgtttgattcctattgtcaagggcgcaaaacaagtcattttggttggtgatcaccaacaa ttgggaccagttattttagatagaaaagctggcgatgctggtttaaaacaatcactattt gaaagattgatcactttgggccatgtgccattcagactagaggttcaatatagaatgaat ccacacttgagtgagttccccagtaatatgttttatgatggcagtttgcaaaacggcgtt accatggaacaacgtttattaccgaatagcaatttcccatggccaatacacgatgttcca atgatgttttgggctaattatggtagagaggagatatctagtaatggcacgtcttatttg aatagaattgaagctatgaattgtgagcgaataatcaccagattgtttaaggatgggatt aagcctgaacaaattggtgttattaccccctacgagggtcaaagagcctatattgttcaa tatatgcagatgaatgggtccatggacaaagatgcgtatttaagtgttgaagtttcctct gttgacgctttccaaggtcgtgaaaaggattttattatattatcatgtgttcgtgccaat gaccaacaaactattgggtttttaagtgaccctcgccgtttaaatgttgctctaactcgt tctaagtatgggttgattattttgggtaatccagcttctttatcacgtaatattctatgg aacaatttattggttcattttagatctaagggatgtttagttgaaggttcattggacaat ttgcaaatgtgtgctgtccaattaatgaaacctgtacaaaataacaacaaaaagaacaat gcgaataataataacaataccaataatattactaataaggggaactcttatattaatgat tttacaaataattataacagtagcatccataatatgaataattttattaataatgctaat aacaattactataacaataatattaacagcagtagcagccatttcgatactcaaagtatt gtctcattcaatcaagtccaagatccttcctctttatttgttcaagatacagatttatct tcatttttacataaacagtttatgaataatgatggtccaacagattacgtacaagaagca tttagtaatttaaatgttaaataa

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