Saccharomycodes ludwigii: SCDLUD_004656
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Entry
SCDLUD_004656 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
slud
Saccharomycodes ludwigii
Pathway
slud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCDLUD_004656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slud03019
]
SCDLUD_004656
Messenger RNA biogenesis [BR:
slud03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SCDLUD_004656
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SCDLUD_004656
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
70109973
NCBI-ProteinID:
XP_045933157
LinkDB
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Position
VI:complement(568172..569275)
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AA seq
367 aa
AA seq
DB search
MSTPVISIVKRSTGTLIPDSNDYYDNANGIDNSDSDSDIEMLDNDNNNDINKTGIVTPGE
LVTDDPVWMRGHGTYSLQNKTYSSVCGTVSRVNKLLSVIPLRGRYQPETGDHVIGRITEV
GNKRWKVAIGAKQDAVLMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLLNAEVQSLFQD
GAAALHTRSLKYGKLRNGFFLEVPNSLIIRSKDHTHDLPGGVTVILGVNGYIWLRKTSNN
NARANVSLSGKNANTLKNISRGTALTTKRGVSDELQLGITRLEEESSWEIYSDKNDDISF
SIKQTITRYANVIKSLAHCEIGINEQRIIAAYEASLAYPDLSSLVETETMESLGQDVING
EKIRGSA
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaccagttatttcaattgttaaacgatctactggcacattgattccagatagc
aatgactactatgacaatgctaacggtatagacaactcggactcagattcagatattgag
atgcttgacaatgataataacaatgacatcaataagactgggattgtaacgccgggcgaa
ctagtcactgacgaccctgtatggatgagaggtcatggcacatattccctacagaataaa
acgtattcttcggtttgcggcacagtgtctcgtgtcaacaagttactatcggtaattcca
ctaagaggacgttatcaacctgaaacgggtgaccatgtaattggaagaatcacagaagtg
gggaataaaaggtggaaagtcgctattggcgctaagcaagatgctgttttaatgttgggt
agtgttaatttacctggtggtgttttaagaaggaaatctgaaagtgatgagttacaaatg
agaaacttcctaaaggagggggatttattgaacgcagaggtgcaaagtttatttcaagat
ggtgccgctgcgttacataccagatctttaaagtatgggaagttaaggaatgggtttttt
ttggaagttcctaattctctaatcatcagatcaaaagatcatacccatgatttgcctggg
ggtgtcactgttatattgggcgtaaatggttatatatggctacgaaagacatcaaataac
aatgcccgtgctaatgtttctttaagtggcaagaatgcgaatactttaaagaatatatca
agaggtacagcattaactacaaaaagaggtgttagtgatgagttgcaacttggaataacc
agattagaagaagaatcatcttgggagatttattctgataagaatgatgatatttccttt
tctattaaacagaccattactagatatgctaacgtaatcaaatcattggctcattgcgag
attggtataaatgagcaacgtataatagctgcttatgaggcaagtctggcctatcctgat
ttgagttctttagtcgaaaccgaaactatggaatctttgggccaagacgtgataaatggt
gaaaaaataagagggtctgcctag
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