Saccharomycodes ludwigii: SCDLUD_005195
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Entry
SCDLUD_005195 CDS
T08289
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
slud
Saccharomycodes ludwigii
Pathway
slud03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slud00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SCDLUD_005195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slud03041
]
SCDLUD_005195
Enzymes [BR:
slud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SCDLUD_005195
Spliceosome [BR:
slud03041
]
Complex C
Other components
Step II factors
SCDLUD_005195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_19
PduV-EutP
nSTAND3
AAA_30
Motif
Other DBs
NCBI-GeneID:
70110512
NCBI-ProteinID:
XP_045932789
LinkDB
All DBs
Position
VII:468949..472572
Genome browser
AA seq
1207 aa
AA seq
DB search
MSTLPLCKQILDVLKIKDEVVSDFIIDIFEKSTGQDIQFFIKELNSLDIDKPTSMKLYYI
IKNYYNSTQHKQLKQTSLIVILKKVFKNSNEIGPADLETMSNFIYDIYAKMERSNENGDI
SLFAEKLRQFGLSDAIISDIYQILTSNNKGSFTEIKENKNNHSSTAMLLKNTNSAAVKIA
NGVQDLSPILNNVYKGIIKARTKFGYFIEILGTREENVEGLCHNNEISVSSSTSQDLRIN
EPVYVQIIKLQNNGKISLSMKNVNQKTGELIEIDNFNNVDNLKRGRALNRTSTNVYGEKA
HVNNEAPRRTLTSPERWEIRQLISSGVSKLEDYPEYQEYLKMEKRKQSLSTATINAKRST
NEHGQINKASSKLSRSYQEEEMPEEEDMDIIMNKNGKPKFLKASKDLKVGNNAGYKQAMT
KLVKVPRGSLNRNAINGSRLMNEHRDEKFNKRKEVESEVIRGRNLHDPASNNNNNNISSN
NNNNNVRLQPVSMKESRQEFKRKQLALTAWERKRLKEHIEYGRHTNLSIQEQRKSLPVYK
MRQELIKSIIENQFLIIIGETGSGKTTQITQYLYEDGFAVNGKVIGCTQPRRVAAISVAK
RVAEEMDCFVGEEVGYTIRFEDETSNRTRIKYMTDGMLQREATIDPLLQNYSVILLDEAH
ERTVATDVLFALLKRAAKERPHDLKIIITSATLDSEKFSNYFNDCPIVKIPGKTFPVEVM
YSKTPQIDYIESSLDTVMNIHINEPEGDILVFLTGQEEIDTCCEILYERFTKLEAVLDKK
LIILPVYSALPNEIQSKIFEPTPPGSRKVIFATNIAETSITIDGIYYVVDPGFSKINTYN
PRIGMEQLIVTPISQAQANQRKGRAGRTGPGKCYRLYTETAFYNEMLPTAIPEIQRQNLS
NTVLMLKTIGIDDLINFEFMDPPPKTAIIYALEELYHLQALDEKGGLTELGHKMAQFPMD
PELSRSLLASAMVYNCSEEIMIIISMLSVQNIFYRPKDHKSEADRKRAQFVHVYGDHLTL
LNVYRKWRLNLHISKKWCNDNYLHERHLKRAHDVYLQLLKIFHKLNLSVISCGGQVDNIR
RSLVAGFFRNCSKRADGSTYKTIVDNTEVAIHPTSTLFGKEYEYLLYNNLMMTTREYMSI
ITVIEPKWLLECAPHFYKAADERSKKRVKIEPLRGMFGGKDKRIDDRWRLTSKLKSKGDV
LGHKQRK
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgctgccactttgcaaacaaatccttgatgtactcaaaattaaagatgaggtg
gtgtccgattttattatagacatctttgaaaagtccactggtcaagacatacaatttttt
ataaaagaattgaattccctggatatagataaaccaacaagtatgaaattatattacata
attaaaaattattataactcaacccaacacaagcaactgaaacaaaccagcctaatcgtt
attcttaaaaaagtgtttaaaaatagtaatgaaatcggaccagccgatttagaaaccatg
agtaacttcatatatgacatatatgctaaaatggaaaggagcaatgaaaacggcgatata
agtttgtttgctgaaaaattaagacaatttggattaagtgatgcaataatatcggatata
tatcagattctaacatccaataataaaggttcctttactgaaatcaaagaaaataaaaat
aaccactcttctactgctatgttactaaaaaatacaaatagcgctgctgttaagatagca
aacggtgttcaggacttgtcaccaattttaaacaatgtttacaaagggattatcaaagca
cgaacaaaatttggttatttcattgaaatattagggactagagaggaaaatgttgaaggt
ttatgtcataataatgaaatatctgtatcttcttcaacttcacaagacctcagaattaat
gagccagtgtatgtccaaattatcaaattacaaaataatggcaaaatatctttaagtatg
aagaatgttaaccaaaaaacaggggagcttatcgagatcgacaatttcaataatgtcgat
aatttaaaaaggggccgagctcttaaccgcacaagtaccaatgtttatggcgagaaagcc
catgtaaataatgaagctcctagaaggacattaacatcgcctgaacgatgggaaattagg
caattaatttctagtggtgtatccaaacttgaagattaccctgaatatcaagaatacttg
aaaatggaaaagaggaaacaaagtttatcaactgctaccatcaatgctaaaagatcaact
aatgagcatggtcagattaataaagccagttctaagctatctcgtagctatcaggaagag
gaaatgcctgaggaagaagatatggatattataatgaataagaatgggaaaccaaaattt
ctcaaggcaagtaaagacttaaaagttggtaataacgctggttataaacaagctatgaca
aagctagttaaagttccaagaggttccttaaatagaaatgcaattaatggatcgaggtta
atgaatgagcacagagatgaaaagtttaataaaagaaaggaagtggagtctgaagttatc
aggggaagaaatttacacgacccagcttctaataataataacaacaatatcagtagtaat
aataataataataatgtacgtttacaaccagtatctatgaaggaatctaggcaagaattt
aagaggaagcagctggcattgactgcttgggaaagaaaacggttaaaagaacatatagag
tatgggagacatacaaatttaagtatacaagaacaaaggaaaagtttacccgtctataag
atgagacaagaactaataaagtccataatagaaaatcaatttttaattattattggtgaa
acaggttctggtaaaactacacaaataacacagtatttatatgaagacgggttcgccgtt
aatggtaaagtgataggttgtactcaacctcgtagagttgctgccatatctgtggctaaa
agagtagctgaagaaatggattgttttgttggtgaagaagttggctacaccatcaggttc
gaagatgagaccagcaatagaacacgaataaaatatatgaccgatggtatgttgcagagg
gaggctacaatagatcctttgttgcaaaattattctgttatattactagatgaagcgcat
gagagaactgttgccacagacgtcttatttgctttattaaaaagagccgctaaagaaaga
ccccatgatttgaaaattattatcacatcagctacattagactcggaaaagttttccaat
tattttaatgattgtcccattgtaaaaattccaggtaaaactttccctgtggaggtgatg
tactctaaaaccccacaaatagattacatcgaaagttccttggatacagtaatgaacatt
cacatcaatgaacctgagggcgacatattggtatttttgactgggcaagaggagatcgat
acttgttgtgaaatactctatgaacgttttaccaagctagaagccgttctagataaaaaa
ctaataatcttaccagtctattctgcactacctaatgaaatacagagtaaaatttttgag
ccgacacctccgggctcaagaaaggtaatttttgctacaaacattgcagaaacctccatc
acaatagatgggatttattacgttgttgatccaggattttctaaaatcaatacttataac
cccagaataggtatggaacagttgatcgttaccccaatctcacaagcacaagccaaccaa
agaaagggtagggctggtaggactgggcctggaaaatgctatagattatacaccgaaacc
gcattttacaatgaaatgttgcctacggctattcctgaaatacaaagacaaaatttatct
aacactgttttaatgttaaaaactattggtattgatgacttgatcaattttgaatttatg
gatccaccacctaaaactgcgataatttatgcattggaagagttgtatcatctacaggca
ctagatgaaaagggcgggttgacagaactaggtcataaaatggcacaattccccatggat
cctgaactatctagaagtttattagcatccgcaatggtctataattgcagcgaagaaatt
atgattattatatccatgctttctgtccaaaatatattttacagacccaaggatcacaag
tctgaggcagataggaaaagagcacaatttgtgcatgtctacggcgaccatttaacttta
ttgaatgtgtatagaaagtggagactaaacttgcatatatctaaaaaatggtgcaatgat
aattatctacatgaaagacacttgaaaagagcgcatgatgtatatttgcaacttttgaaa
attttccacaagttgaatctatctgtcataagttgtggtggacaggtggacaatatcaga
agatctttagtggcaggattttttagaaattgttctaaaagggcggatggctcaacttat
aagactattgttgataacactgaagttgccattcatccaactagtacgttgtttgggaaa
gaatatgaatatcttttatataataatctaatgatgaccacgagagagtatatgtcgatt
attaccgtaatagaacctaaatggttattagaatgtgcaccacatttttataaagctgct
gatgagagaagtaaaaagagagttaagattgagccattgaggggcatgtttggtggtaaa
gataaaaggatagatgaccgttggagattaacttctaaattgaaaagtaagggagacgta
ttgggtcataaacaaagaaagtag
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