Streptomyces luomodiensis: PS467_04520
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Entry
PS467_04520 CDS
T10277
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sluo Streptomyces luomodiensis
Pathway
sluo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sluo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PS467_04520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sluo03400
]
PS467_04520
Enzymes [BR:
sluo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PS467_04520
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PS467_04520
DNA repair and recombination proteins [BR:
sluo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PS467_04520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
Zn_ribbon_RRN7
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
WNE94654
LinkDB
All DBs
Position
complement(1117542..1118408)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALTAILAERAAGREIARVLPVAVSVLKTYDPPPSALEGRTVTAAARHGKFLD
LATDGPHLVVHLAKAGWLRWRDGLPEAPPRPGKGPLALRLLLAGPERSGFDLTEAGTRKG
LAVYVVRDPREVPGIARLGPDPLDDSFTLETFAGLLRGARHRIKGVLRDQSVIAGIGNAY
SDEILHAARMSPYRLASDLTEEEIAGVYEAMGTTLRSAVERSAGLAATDLKGEKRGGMRV
HGRTGEPCPVCGDTVREVSFRDSSLQYCPTCQTGGKPLADRRLSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctgcccgaggtggaggccctcaccgcgatcctggccgagcgtgccgccggc
cgggagatcgcccgtgtcctccccgtcgcggtgagcgtcctgaagacctacgacccgccg
ccgagcgcgctcgagggccgcaccgtcacggcggcggcccgccacggcaagttcctcgac
ctggccaccgacggcccccatctggtggtccacctcgccaaggcgggctggctgcgctgg
cgggacgggctgcccgaggccccgccccgccccggcaagggcccgctcgcgctgcggctg
ctcctggccggcccggagcgctccggcttcgacctcaccgaggccgggacgcgcaagggg
ctcgcggtgtacgtggtccgcgacccccgagaggttcccgggatcgcccggctgggcccg
gacccgctcgacgactccttcaccctggagacgttcgccgggctgctgcgcggcgcacgc
caccggatcaagggggtgctccgcgaccagagcgtcatcgcgggcatcggcaacgcctac
tccgacgagatcctgcacgccgcccggatgtcgccctaccggctggcctcggacctcacc
gaggaggagatcgccggagtgtacgaggcgatgggcaccacactgcgctccgccgtcgag
cggtcggcgggtctggccgccaccgacctcaagggtgagaagcgtggcgggatgcgggtg
cacgggcgcaccggagagccgtgtccggtgtgcggggacaccgtccgcgaggtgtccttc
cgcgactcctcgttgcagtactgccccacctgccagaccggcggcaagccgctcgccgac
cgtcggctctcccggctcctcaaatag
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