Streptomyces luomodiensis: PS467_15010
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Entry
PS467_15010 CDS
T10277
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sluo Streptomyces luomodiensis
Pathway
sluo03018
RNA degradation
Brite
Enzymes [BR:
sluo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PS467_15010
Messenger RNA biogenesis [BR:
sluo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PS467_15010
Ribosome biogenesis [BR:
sluo03009
]
Prokaryotic type
rRNA processing factors
PS467_15010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WNE96546
LinkDB
All DBs
Position
complement(3455807..3460081)
Genome browser
AA seq
1424 aa
AA seq
DB search
MLEPIEPTQPFQPLGPSAARAAAPGDAIESTPSDTLPPRRRRAASRPAGPPAGAVSDAEV
TTPSVPAIPADQAGSAGSSEAASVADAAVVTASGSASGPDAASAAPPARPRRRATRKAAA
PAGSPEAAETVVPADAGRGGEAAEAATEPVVEAAPEAAPPARTRRRATRKATAPAGAPVE
AAKSEEAETPAEAEESGAAAEAETVPAAPARTRRRATRKATAPAGPPQAEAADADASSAA
AAGDEATAPADDAPADETPRTRTRRRATRKATAPAGAPVEAAKPEEAETPAEAEESGAAA
EAETVPAAPARTRRRATRKATAPAGPPQAEAAEEPVTEESVAEKPVAAEPVAEESVAGQR
SESAEETAGTEAVEAPRARTRRRAARSAAPAAEEPAAAPEPQAVETPAVETPAAEAPAAE
AASEAEPEPAPRSRRRAVRPPKAVFQAPVFTEPVFQTPESAAAALREAEEEEDQEQLTAE
TVEPEAPTSRRRRRRRGGEPVEEHPEAEETGAEAEAESGQPESDQPEGEHGEEESGDRPA
RRRRRGGRRRRRGEAAEAEGAEGRPEAETGERYEDEPAAEGESAEEQGEDQDEAAGPGAG
ELGGTTSASSRRRRRRRRRSGEAVDVETSGDDPERTVVKVREPRERRGKEAESGADEVQS
IKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQHGDRTQIGVLED
NVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDISKGRNAVLYAGEVNFEALGLA
GGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPD
TERARLKQILKKIVPEDAGVIVRTAAEGASEEELSRDVARLQAQWEEIQKKAKSGGAPSL
LYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWQTIHGYVSHVAPDLVDRLQKWTSDVDVFA
TYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGQGGNLEETVTRNNLEA
AEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQ
MTRKRVGQGLLESFSESCVHCNGRGVIVHMDQPSAAGGGKRKKKKAAAGTGQQPAEPEQA
AVAEAEDVTEAAAEIAAEATQPKPLPEPVFAADEELYSSAAEAEAAATRGRTRRRATRKV
TAPAGAPKAAGRPEGAVVVVADEPKETPQAVPEPAPEAAVEAPAPAPVEEPVAAPQPEAV
APLEAVPAPRTRRRVTRKVTAPAGSPTGSEEAAVVVVSAPAAEPEPASEPERPEPSPEPE
AVSQDAPAEGAPAEDASAETETETETEAPAKKTARKAAAKKAPAKKTAAKKTAAKKTAAK
KTAAKKTTAKKTTAKKTTAKKTAAKKTAAAEQQTPPSVSAAAED
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccaattgagccgacccaacctttccagccccttgggccgtcagcggcgcgt
gccgcggcgcccggggatgccatcgagagcacgcccagcgacaccctgccgccgcgccgc
cgccgtgcggcctcccgcccggccggcccgccggccggtgccgtgagcgacgccgaggtc
accacgccctccgtaccggccataccggctgatcaggccggttccgccggctcgtccgag
gccgcgtcggtcgccgatgccgccgtggtcaccgcgagtggctccgcgtccggccccgat
gccgcgtccgccgctccgcccgcccgtccgcgtcgccgggcgacgcgcaaggcggcggct
ccggcgggttcgccggaggccgcggagaccgtggtgccggccgacgccggccgtggcggt
gaggcggccgaggccgccaccgagcccgtggtggaggctgcccccgaggccgctccgccc
gcccgtacgcgtcgtcgtgcgacccgtaaggcgaccgctccggcgggtgcgcccgtggag
gcggcgaagtcggaggaggcggagacgccggccgaggcggaggagtcgggcgcggctgcc
gaggcggagaccgtgcctgcggcgcccgcccgtacgcgtcgtcgtgccacccgtaaggcc
accgcccccgccggcccgccgcaggccgaggccgccgacgcggacgcgtcgtctgcggcg
gccgctggtgacgaggccacggccccagccgacgatgccccggccgacgagaccccgcgg
acccgtacgcgtcgtcgtgcgacccgtaaggcgaccgctccggcgggtgcgcccgtggag
gcggcgaagccggaggaggcggagacgccggccgaggcggaggagtccggcgcggctgcc
gaggcggagactgtgcctgcggcgcccgcccgtacgcgtcgtcgtgccacccgtaaggcc
accgcccccgccggcccgccgcaggccgaggccgccgaggagcccgtcaccgaagagtcc
gtcgccgagaagcctgtggctgcggagcccgtggccgaggagtccgtcgccgggcagcgg
agcgagagcgccgaggagaccgccggtacggaggccgtggaggcgccgcgcgcccgcacc
cgccgccgggccgcccgtagcgccgcacccgccgccgaggagccggccgccgcgccggag
ccgcaggccgtcgagacccccgccgtcgagactccggccgctgaggccccggctgccgag
gccgcgtccgaggcggagccggagcccgcgccccgctcgcggcgccgggcggtccgcccg
ccgaaggccgtgttccaggcgccggtcttcaccgagccggtcttccagacgccggagagc
gccgccgccgcgctgcgggaggccgaggaggaggaagaccaggagcagctgacggccgag
accgtcgagcccgaggcgcccaccagccgccgtcggcgccgccgccgtggcggtgagccc
gtcgaggagcacccggaggcagaggagaccggggccgaggccgaggccgagtccggtcag
cccgagtcggaccagcccgagggcgagcacggcgaggaggagtcgggcgaccgtccggcc
cgccgccgtcgccggggcggacgccgtcgccgtcggggcgaggccgccgaggccgagggc
gccgaggggcgtcccgaggccgagaccggtgagcggtacgaggacgagcccgccgccgag
ggcgagagcgccgaggagcagggcgaggaccaggacgaggcggccggccccggggccggc
gagctcggcggtaccaccagcgccagcagccgtcgtcgccgtcgccgccgtcggcgcagc
ggcgaggccgtcgacgtggagacgagcggtgacgacccggagcgtacggtcgtcaaggtc
cgtgagccgcgggagcggcgtggcaaggaggccgagtccggcgccgacgaggtgcagtcg
atcaagggatcgacgcgtctggaggccaagaagcagcgccgtcgcgagggccgtgagcag
ggccgtcgtcgtgtgccgatcatcaccgaggccgagttcctggcccgccgcgaggcggtc
gagcgggtcatggtcgtccggcagcacggcgaccgcacccagatcggggtgctggaggac
aacgtcctcgtcgagcacttcgtcaacaaggagcaggcgaccagctacgtcggcaacgtc
tacctgggcaaggtccagaacgtgctgccgtcgatggaggcggccttcgtcgacatcagc
aagggccgcaacgccgtgctgtacgcgggcgaggtgaacttcgaggccctggggctcgca
ggcggcccgcgccgcatcgagaccgccctgaagtccggccagtccgtcctggtgcaggtc
accaaggacccgatcggccacaagggcgcccggctgaccagccaggtctccctcccgggc
cgctacctggtctatgtgcccgagggctcgatgaccggcatcagccgcaagctgcccgac
accgagcgggcgcggctgaagcagatcctcaagaagatcgtccccgaggacgcgggcgtg
atcgtccgcaccgccgccgagggcgcgagcgaggaggagctgtcccgcgacgtcgcccgg
ctacaggcgcagtgggaggagatccagaagaaggcgaagagcggtggcgccccgtcgctg
ctctacggcgagcccgacatgaccgtccgggtcgtccgcgacatcttcaacgaggacttc
tccaaggtcatcgtcagcggtgacgacgcctggcagaccatccacggctatgtctcgcac
gtggcgcccgacctcgtggaccggctccagaagtggacctcggacgtcgacgtcttcgcc
acctaccggatcgacgagcagctgatgaaggcgctggaccgcaaggtctggctgcccagc
ggcggctcgctggtgatcgaccggaccgaggcgatggtcgtcatcgacgtcaacaccggc
aagttcaccggccagggcggcaacctggaggagacggtcaccaggaacaacctggaggcg
gccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatcatcgtgatcgac
ttcatcgacatggtgctggagtccaaccgcgacctggtgctgcgccgactgctggagtgc
ctgggccgggaccgcacgaagcaccaggtggcggaggtcacctcgctcggcctggtccag
atgacccgtaagcgggtcggccaggggctgctggagtccttctccgagtcctgtgtgcac
tgcaacggccgcggtgtgatcgtccacatggaccagccgtccgccgccggcggcggcaag
cgcaagaagaagaaggccgcggccggtaccggtcagcagccggccgagccggagcaggcc
gccgtggccgaggccgaggacgtcaccgaggcggcggccgagatcgccgcggaggccacg
cagccgaagccgctgcccgagccggtgttcgcggccgacgaggagctgtacagcagcgcc
gccgaggccgaggccgccgcgacccgtgggcgtacgcgccgccgtgccacccgtaaggtg
accgccccggcgggcgccccgaaggccgccgggcggccggagggcgcggtggtcgtggtg
gccgacgagcccaaggagacgccccaggcggtgcccgagccggcgccggaggcggccgtg
gaggcccccgctcccgctcccgtcgaggagccggtggccgcgccccagccggaggccgtg
gccccgctggaggccgttcccgcgccgcgtacgcggcgtcgggtgacccgtaaggtgacc
gcccccgcgggctcgccgacgggctccgaggaggcggccgtggtggtcgtgagcgcgccc
gcggcggagccggagccggcgtccgagccggagcggcccgagccgagcccggagccggag
gcggtgtcccaggacgcgcctgctgagggtgcgcccgccgaggacgcttccgccgagacc
gagaccgagaccgagaccgaggcgccggcgaagaagaccgcccgtaaggcggccgccaag
aaggccccggcgaagaagacggccgccaagaagaccgccgcgaagaagacggcggcgaag
aagactgccgccaagaagaccacggcgaagaagaccacggcgaagaagacgaccgccaag
aagacggcggccaagaagaccgcggcggcggagcagcagactccgccgtcggtgtcggcc
gccgccgaggactga
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