Streptomyces luomodiensis: PS467_22405
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Entry
PS467_22405 CDS
T10277
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sluo Streptomyces luomodiensis
Brite
KEGG Orthology (KO) [BR:
sluo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluo03019
]
PS467_22405 (hrpA)
Enzymes [BR:
sluo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PS467_22405 (hrpA)
Messenger RNA biogenesis [BR:
sluo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PS467_22405 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
ResIII
NACHT
T2SSE
SLFN-g3_helicase
nSTAND_NTPase5
AAA_16
AAA_30
AAA_25
PhoH
DUF6139
SRP54
NTPase_1
Zeta_toxin
TsaE
Motif
Other DBs
NCBI-ProteinID:
WNE97884
UniProt:
A0ABY9V7A3
LinkDB
All DBs
Position
complement(5315574..5319500)
Genome browser
AA seq
1308 aa
AA seq
DB search
MSTTPAPALPALLERLPELMLRDQQRLGRRLDGVRRIRKPEARATVLEEIAEEITRAELR
VADRRAAVPAVTYPEELPVSQKKDAILEAVRDHQVVIVAGETGSGKTTQIPKICLELGRG
VKGLIGHTQPRRIAARTVAERIAEELRSPLGESVGWKVRFTDQVSKDTHVKLMTDGILLA
EIQTDRELRQYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIDPERFSRH
FGDAPIVEVSGRTYPVEVRYRPLLEEGGEDGDRDQITAICDAVDELQAEGPGDILVFLSG
EREIRDTADALNKKKLPATEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPG
IRYVIDPGAARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGICIRLYSEDDFLT
RPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDRRNIKDGIQLLEELHALDSKQ
KDPRKRLTQVGRKLAQLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDPRERPSDKQQ
QADQSHARFKDESSDFLAFLNLWKYIRERQKELSSSAFRRMCRNEFLNYLRIREWQDIYS
QLRTVAKTMDIHMSEQDAAPDHIHTSLLAGLLSHVGLKDTDKNEYLGARSAKFAVFPGSA
LFKKPPRWVMSAELVETSRLWARVNARIEPEWIEPLAQHLVKRTYSEPHWEQKQAAVMAY
ERVTLYGVPIVAQRKVNYGRIDPETSRDLFIRNALVEGDWRTHHQFFHDNRKLLGEVEEL
EHRARRRDILVDDETLFDFYDQRIPEHVVSGAHFDSWWKHKRREAPELLTFEKSMLINER
AQDVTKDAYPDSWRQGRLKFKVTYQFEPGADADGVTVHIPLQVLNQVTADGFDWQIPGLR
EDLVTELIRSLPKPVRRHYVPAPNYAKRFLDAAVPLQEPLTAALGRELHRMVGVRIEPED
WDLAKVPDHLKITFRVVDERRRKLAEDKDLEALRQRLRPKTRAAISKAFESSKEAVGIEQ
RGGLTRWTVGTLPRTFETRRGGQPVKAYPALVDEGASVAVRLFDTEAEQREAMWRGTRRL
ILLQLPSNPAKFVQGKLSNQAKLALASSPHGSVQALFDDCVAAAADRLIATHGGPVWDEE
SFRKLFDAVRTDIMDTTLDTVRKVQEVLAAWQSCERRLKATRSPVLLPSLTDIREQLSEL
ITPGFVTAHGVRRLPDLMRYLVAVDRRLQQLPVNADRDRARMAKVREMRDEYAWLLEQFP
PGRPVPQEALEIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgacgcctgcccccgccctgcccgccctgctggagcggctgcccgagctgatg
ctgcgcgaccagcagcggctggggcgccgcctcgacggagtgcgccggatccgtaagccc
gaggcccgagccaccgtactcgaggagatcgccgaggagatcacgcgtgccgagctgagg
gtcgcggaccgccgcgccgccgtgccggccgtcacctatccggaagagctgccggtcagc
cagaagaaggacgcgatcctcgaggccgtccgggatcaccaggtggtgatcgtcgcgggt
gagacgggctccgggaagaccacccagatcccgaagatctgcctggagctcgggcgcggc
gtcaagggccttatcggccatacgcagccccgccggatcgcggcccgtaccgtggccgag
cgcatcgccgaggagctgcgctcgccgctgggcgagtccgtcggctggaaggtccgcttc
accgaccaggtgagcaaggacacccacgtcaagctgatgaccgacggcatcctgctggcc
gagatccagaccgaccgcgagctgcgccagtacgacacgatcatcatcgacgaggcccat
gagcgcagcctcaacatcgacttcctgctcggctatctggcccagctgctgccccgccgc
cccgacctcaaggtcgtgatcacctccgccaccatcgacccggagcgcttctcccggcat
ttcggcgacgccccgatcgtcgaggtcagcggacgtacgtatccggtcgaggtgcgctac
cgcccgctgctggaggagggcggcgaggacggcgaccgcgaccagatcaccgcgatctgc
gacgcggtcgacgagctccaggccgagggccccggcgacatcctggtcttcctctccggt
gagcgggagatccgcgacaccgccgacgcgctgaacaagaagaagctcccggccaccgag
gtgcttccgctgtacgcccggctgtcgcacgccgagcagcaccgggtcttccagagacac
accggccgccggatcgtgctggcgacgaacgtcgccgagacctcgctgaccgtccccggc
atccgctacgtgatcgatccgggcgccgcccggatctcccgttacagccaccgcaccaag
gtccagcggctgcccatcgagccgatctcgcaggccagcgccaatcagcggaagggccgc
tgcggccggaccagcgacggcatctgcatccggctgtactccgaggacgacttcctcacc
cgcccggagttcaccgacgccgagatcctccgcaccaacctggcctccgtcatcctccag
atgaccgccgccggcctcggcgacatcgagaagttccccttcatcgatccgccggaccgc
cgcaacatcaaggacggcatccagctcctggaagagctgcacgccctggacagcaagcag
aaggacccgcgcaagcggctcacccaggtcggccggaagctggcccagctgccggtggac
ccgcggctggcccggatggtgctggaggcggaccgcaacggctgtgtccgcgaggtgatg
gtgatcgcggcggcgctgtccatccaggacccgcgcgagcgtccctccgacaagcagcag
caggcggatcagagccacgcccgcttcaaggacgagtccagcgacttcctggccttcctc
aacctgtggaagtacatccgggagcggcagaaggagctgtcctcgtccgccttccgccgg
atgtgccgcaatgagttcctcaactacctgcgcatacgcgaatggcaggacatctacagc
cagctgcgcacggtcgccaagaccatggacatccacatgtccgagcaggacgcggcgccc
gaccatatccacacctcgctgctggcggggctgctctcccatgtgggtctcaaggacacc
gacaagaacgagtacttgggcgcgcgcagcgccaagttcgcggtgttccccggctcggcg
ctgttcaagaagccgccgcgctgggtgatgtcggccgagctggtggagacgtcccggctg
tgggcgcgggtcaacgcgcggatcgagccggagtggatcgagccgctcgcccagcacctg
gtcaaacgcacctacagcgaaccgcactgggagcagaagcaggccgcggtgatggcgtat
gagcgggtcacgctctacggtgtgccgatcgtcgcccagcggaaggtcaactacggccgg
atcgacccggagaccagccgcgacctgttcatccgcaacgccctggtggagggcgactgg
cgcacccaccaccagttcttccacgacaaccgcaaactgctgggcgaggtcgaggagctg
gagcaccgtgcccggcgccgcgacatcctcgtggacgacgagacgctcttcgacttctac
gaccagcggatccccgagcacgtggtctcgggcgcgcatttcgactcctggtggaagcac
aaacggcgcgaggcgccggagctcctcaccttcgagaagtcgatgctcatcaacgagcgg
gcgcaggacgtcaccaaggacgcctacccggactcctggcgccaggggcggctcaagttc
aaggtgacctaccagttcgagccgggcgcggacgcggacggcgtgacggtccacatcccg
ctccaggtgctcaaccaggtcaccgccgacggtttcgactggcagatcccggggctgcgc
gaggacctggtcaccgagctgatccgctcgctgcccaaaccggtccgccggcactacgtc
ccggcgccgaactacgccaagcgcttcctggacgccgccgtgcccctccaggagccgctg
acggcggcgctggggcgcgagctgcaccggatggtgggcgtgcggatcgagccggaggac
tgggacctggcgaaggtccccgaccacctcaagatcaccttccgggtggtggacgagcgg
cgccgcaagctcgccgaggacaaggacctggaggcgctgcggcagcggctgcggccgaag
acgcgggccgcgatctccaaggcgttcgagtcctccaaggaggccgtggggatcgagcag
cgcggcgggctgacccggtggacggtcgggacgctgccgcgcaccttcgagacgcgccgc
ggcggccagccggtcaaggcgtatccggcgctcgtcgacgagggcgcgtcggtggccgtg
cggctcttcgacaccgaggccgagcagcgggaggcgatgtggcgggggacgcgccggctg
atcctgctccagctgccgtccaaccccgccaagttcgtccagggcaagctctccaaccag
gcgaagctggcgcttgccagcagtccgcacggcagtgtgcaggcgcttttcgacgactgc
gtggccgccgcggccgaccggctgatcgcgacccacggcggcccggtctgggacgaggag
tcgttccgcaagctcttcgacgcggtgcgcaccgacatcatggacaccacgctggacacc
gtgcgcaaggtccaggaggtgctggcggcctggcagtcgtgcgagcggcggctgaaggcc
acccgcagccccgttctgctgccgtccctcaccgacatcagggagcagctctcggagctc
atcacaccgggtttcgtgaccgcgcacggcgtacggcggcttccggacctcatgcgctat
ctggtggccgtggaccggcggctccagcagctcccggtcaacgccgaccgggaccgcgcc
cggatggcgaaggtgcgggagatgcgggacgagtacgcctggctgctggagcagttcccg
ccggggcgcccggtgccccaggaggcgctggagatccggtggatgatcgaggagctgcgg
gtcagctacttcgcgcacgccctcggcacggcctatccggtgtccgacaagcgcatcgtg
aaggccatcgacgcggcggcgccgtag
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