Streptomyces luomodiensis: PS467_30235
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Entry
PS467_30235 CDS
T10277
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sluo Streptomyces luomodiensis
Pathway
sluo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sluo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PS467_30235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluo03019
]
PS467_30235
03400 DNA repair and recombination proteins [BR:
sluo03400
]
PS467_30235
Enzymes [BR:
sluo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PS467_30235
Messenger RNA biogenesis [BR:
sluo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PS467_30235
DNA repair and recombination proteins [BR:
sluo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PS467_30235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WNE99307
LinkDB
All DBs
Position
complement(7151802..7153967)
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AA seq
721 aa
AA seq
DB search
MSDEDLRTSADRVLARLVGDTTGSARLREDQWRAIEALVAERRRALVVQRTGWGKSAVYF
VATALLRERGSGPTVIVSPLLALMRNQVEAAARAGIHARTINSANTEEWDTIQAEVAAGE
VDVLLVSPERLNNPDFRDQVLPQLAAATGLLVVDEAHCISDWGHDFRPDYRRLRTMLADL
PRGVPVLATTATANARVTADVAEQLGTGEGSTRALVLRGPLDRESLRLGVLPLPDAAHRL
AWLADHLDELPGSGIVYTLTVAAAEEVTAFLRQRGHTVASYTGKTENADRQQAEEDLLAN
RVKALIATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLLLPGREDE
AIWRYFASLAFPPEEQVRRTLEVLARSDRPVSLPALEPQVELRRSRLETMLKVLDVDGAV
RRVRGGWIATGQPWAYDAERYAWVARQREAEQQAMREYAATADCRMEFLRRQLDDEKAAP
CGRCDNCAGARFTAEVSAASLDAARGELGRPGVEVEPRRMWPTGLPAVGVDLKGRIAADE
QAAPGRALGRLSDIGWGNRLRPLLAPQTPDAPVPDDVAGAVVTVLADWAKGPGGWASGAP
DAPARPVGVVTIASRTRPQLIRTLGERIATIGRLPLLGSVAYHAGESDTRVPRTNSAQRL
RALHGALTVPPPLAADLAEAGGPVLLVDDMADTGWTLAVASRLLRRAGAAGVFPLVLAVQ
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaagacctgcgcacctcagccgaccgcgtcctggcccgcctcgtcggggac
accaccggttccgcccggctccgggaggaccaatggcgggcgatcgaggcgctggtcgcc
gagcgccgccgggcgctggtcgtgcagcgcaccggctggggaaagtcggcggtgtatttc
gtcgccaccgcgctgctgcgcgagcgcggcagcggtccgaccgtgatcgtctccccgctg
ctcgcgctgatgcgcaaccaggtcgaggccgccgcgcgcgcgggtatccacgcccgcacc
atcaactccgccaacaccgaggagtgggacaccatccaggcggaggtggccgcgggcgag
gtggatgtgctgctggtgagtccggagcggctcaacaacccggatttccgcgaccaggtg
ctgccacagctcgccgccgccaccggtctgctggtcgtcgacgaggcacactgcatctcc
gactgggggcatgacttccggcccgactaccgcaggctccgcaccatgctcgccgatctg
ccccggggcgtgcccgtgctcgccacgaccgcgaccgcgaacgcacgcgtcaccgcggat
gtggccgagcagttgggcacgggcgaagggtccacacgggcgctggtgctgcgcggcccg
ctggaccgggaaagcctgcggctgggcgtgctgccgctgccggacgccgcgcatcggctc
gcctggctcgccgaccacctcgatgagctgccgggctccgggatcgtctacaccctcacc
gtcgccgcggccgaggaagtgaccgcgtttctgcggcagcgcggccatacggtcgcctcc
tacaccggcaagacggagaacgcggatcgtcagcaggccgaggaggatctgctggccaac
cgggtcaaggcgctgatcgccacctccgcgctgggcatgggcttcgacaagccggacctc
ggcttcgtggtgcacctcggttcaccgtcctcccccatcgcctactaccagcaggtcggg
cgtgccggacgcggtgtggagcacgccgaggtgctgctgctgcccggccgtgaggacgag
gcgatctggcggtacttcgcctcgctcgccttcccgcccgaggagcaggtgcgccgcacg
ctcgaggtgctggcgaggtcggaccggccggtgtccctgcccgcgctcgagccccaggtc
gagctgcggcggtcgcgtctggagaccatgctcaaggtgctcgacgtggacggcgcggtg
cggcgtgtgcgcggcggctggatcgcgaccggtcagccctgggcgtacgacgcggagcgg
tatgcgtgggtggcgcgccagcgggaggccgagcagcaggccatgcgggagtacgccgcg
acggccgactgccggatggagttcctgcggcggcagctggacgacgagaaggcggcgccc
tgtggccggtgtgacaactgcgcgggggcgcggttcaccgccgaggtgtccgcggcctcg
ctggacgcggcgcgcggtgagctggggcggcccggtgtcgaggtggagccgcgccgcatg
tggccgaccggcctgccggcggtcggtgtggacctcaagggccgcatcgcggcggatgag
caggccgccccgggccgggccctgggccgcctctccgacatcggctggggaaaccggcta
cggccgctgctggccccgcagaccccggacgccccggtgcccgacgatgtggccggtgcg
gtggtgacggtgctcgccgactgggccaagggtcccggcggctgggcctcgggcgcgccg
gacgccccggcccgcccggtgggcgtggtcacgatcgcctcacgcacccgcccgcagttg
atccggacgctcggcgaacggatcgccaccatcggccggttgcccctgctcggcagcgtc
gcgtaccacgccggcgagagtgacacccgggtgccgcgcaccaacagcgctcagcggctg
cgtgcgctgcacggcgcgctgaccgtgccacccccgctggcggcggatcttgccgaggcg
ggtgggccggtgctgctggtggacgacatggcggacaccggctggaccctggccgttgcc
tcccggctgcttcgccgggccggagcagccggagtgtttccgctggtcctcgccgtgcag
gggtga
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