KEGG   Sphingomonas lutea: H9L13_04010
Entry
H9L13_04010       CDS       T06880                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
slut  Sphingomonas lutea
Pathway
slut03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:slut00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H9L13_04010 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:slut03400]
    H9L13_04010 (ligD)
Enzymes [BR:slut01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H9L13_04010 (ligD)
DNA repair and recombination proteins [BR:slut03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H9L13_04010 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: QNN68068
UniProt: A0A7G9SJP3
LinkDB
Position
763515..766001
AA seq 828 aa
MAGRKPLDIDTYNAKRDFAKTKEPRGRKLKGKGDSFVVQKHYASRLHWDFRLELDGVLKS
WAVPKGPSLDPGENRLAMRTEDHPLDYGTFEGTIPKGEYGGGTVMLWDRGRWIPDPRKDP
TKTIEEGHLHFTLEGERMRGEWVMFRLKPKPGEKAEPWMLKKVTDDFADPGNGNALVDNC
VTSVTTDRTMAEIASGADVWRSNRGGQKGGRARKKTAKAPPAFEAPQLATLVDDVPTGNG
WLHELKYDGYRLQLAVGDGMATAWTRNGLDWSDKFKALVKAAARLPAGCLIDGEAVALDD
DGRPSFQLLQSTLKEQRGANLAFYAFDLLVDRGEDIRKLPNLERKARLAALLEAVPPPIL
YGDHVVGRGADLFREVCKQGGEGIISKKADAAYKGIRSRNWLKIKCIQRQEFVIVGWSDS
DKRRGFRSLLLGVRDGRKLRYAGKVGTGFNAALIEELMGLMTKLEVDKAPVEVPRADRKG
THWIKPKLVAEVAFTEMTDDGVLRHPSFIALRSDKPAEDVVREKPKKLKKAEKKGERPTA
ASFGIEISSPDRVIYPELKLTKLDLADYYAAVDPLFMIDGGNRPMTLVRCPGGRTGECFF
QKHDKGMFGEHVKQVPIKEKDGSTEDYLYLDDIRGALACVQMGTIEFHGWGSRIDKVEHP
DRLVFDLDPDVGLDFAKVKGAAVRLRAILQDLGLHSFPLLSGGKGIHVVVPLDASRDWPT
VKSFADRFSRAIAEAEPETFTANIRKVERKGRIFIDWLRNQRGATAVMPYSARAREGAPV
AAPVAWSELDDFGSGAHFSIRDADLLLERAASKALAGWGQAKQALPDA
NT seq 2487 nt   +upstreamnt  +downstreamnt
atggcggggcgcaagccgctcgacatcgacacgtacaatgccaagcgcgacttcgcgaaa
acgaaggagccgcgcgggcggaagcttaagggtaagggcgacagcttcgtcgtccagaag
cattacgcgtcgcggctgcactgggacttccggctcgagctggacggcgtgctcaagagc
tgggcagtgcccaaggggccgagcctcgacccgggcgaaaaccgcctcgccatgcggacc
gaggaccatccgctcgactatggcacgttcgaaggcaccatccccaagggcgaatatggc
ggcggcacggtgatgctatgggatcggggccgttggattccggacccgcgcaaggacccg
acgaagaccatcgaggaaggccacctccacttcaccctcgaaggcgagcgcatgcgcggg
gaatgggtgatgttccgcctcaagcccaagcctggcgaaaaggccgagccgtggatgctc
aaaaaggtaaccgacgactttgccgaccccggcaatgggaacgcgcttgtcgataattgc
gtgaccagcgtgaccaccgaccggacgatggccgaaatcgccagcggcgccgacgtctgg
cggtcgaatcgtggcggtcaaaagggcgggcgggcgcgaaagaagacggcgaaagcaccg
cccgcctttgaagcgccacagctagcgaccctggtcgacgatgtgccgactggcaacggc
tggctgcacgagctgaaatatgacggctatcggctgcagctggcggtgggggacgggatg
gcgaccgcctggactcgcaacggcctcgattggagcgacaagttcaaggcgctggtcaag
gcggcggcgcgtctgcctgccggctgcttgattgatggcgaagcggtcgcgctcgacgat
gacggccggccgagctttcagctgctgcagtcgacgctgaaggagcagcgcggcgccaac
ctcgccttctacgccttcgaccttctggtcgatcgcggcgaggacatccgcaagctgccc
aacctcgagcgcaaggcgcgtctcgcggcgttgcttgaggccgtgccgccgccgatcctt
tacggcgaccacgttgtcggccgcggtgccgacctgttccgcgaggtgtgcaagcagggc
ggcgaaggcatcatctccaagaaagccgatgcggcctataagggtatccggtcgcgcaac
tggctgaagatcaaatgcatccaacggcaggagtttgtcatcgtcggctggtccgacagc
gacaagcgccgcggcttccgctcattgctgctcggcgtacgtgacgggcgcaagctgcgc
tacgcgggcaaggtcgggacgggtttcaacgccgcgctgatcgaagagctgatgggactg
atgaccaagctggaggtcgacaaggccccggtcgaggtgccgcgcgccgaccgcaagggc
acgcactggatcaagcccaagttggtggctgaggtcgcattcaccgaaatgaccgacgat
ggcgttttgcggcacccgagtttcattgccctgcgttcggacaagccggcagaggatgtc
gtgcgcgaaaagcccaagaagctgaagaaagcggagaagaagggcgagcggccaacggct
gccagcttcggcatcgagatcagcagtcccgatcgcgtcatctatcccgaactcaagctg
accaagctcgaccttgccgattattatgcggcggtcgatccgttgttcatgatcgacggt
ggcaatcgcccgatgaccctggtccgctgtccgggcgggcgtaccggcgaatgtttcttc
caaaagcacgacaagggcatgttcggcgaacatgtgaagcaggttccgatcaaggagaaa
gacgggtcgacggaggattatctctacttggatgacatccgcggcgcgctcgcctgtgtg
cagatggggacaatcgaattccacggctggggcagcaggattgacaaggtcgaacatccc
gaccggctggtgttcgacctcgaccccgatgtcgggctcgattttgccaaggtgaagggc
gccgccgtacgacttcgcgcgatcctgcaggacttgggcctgcacagctttccattgctg
tcgggcggcaaaggcattcacgtcgtcgttccactcgatgcgtcgcgcgactggccgacg
gtcaagagcttcgccgatcgcttcagccgagcgatcgccgaggcggagccggagaccttc
accgccaacatccgcaaggtcgagcgcaagggccgcatcttcatcgactggctgcgcaac
cagcgcggcgcgacggcggtcatgccgtactccgcccgcgcgcgggaaggcgcgcccgtc
gccgcgccggtggcgtggagcgaactcgacgatttcggcagcggcgcgcacttcagcatc
cgggatgcggatctgctgctggaacgcgcagcgtcgaaggcccttgccggatggggccag
gcgaagcaggcgctgcccgacgcttga

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