Sphingomonas lutea: H9L13_10620
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Entry
H9L13_10620 CDS
T06880
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
slut
Sphingomonas lutea
Pathway
slut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L13_10620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slut03019
]
H9L13_10620
03016 Transfer RNA biogenesis [BR:
slut03016
]
H9L13_10620
Enzymes [BR:
slut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H9L13_10620
Messenger RNA biogenesis [BR:
slut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9L13_10620
Transfer RNA biogenesis [BR:
slut03016
]
Prokaryotic type
tRNA degradation factors
H9L13_10620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
HTH_IclR
LexA_DNA_bind
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
QNN67075
UniProt:
A0A7G9SGV0
LinkDB
All DBs
Position
complement(2049289..2051592)
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AA seq
767 aa
AA seq
DB search
MPKKRPAGLPSRKQILDFIATSDQPAGKREIARAFGLSGADKIQLKALLKDMADEGLIDH
SRGRAFHQMGGVPKVTVLRVVEVDDSGTARAVPEQWHAETAPPKIRIVERERKGALGIGD
RVLSRTEQKGDSYIAHPMKKLAKSAELALGVVRKEGERFWLSPVDKRERRELFISDLKDA
EIGDLVLCEVSGRPPRVSARVDAVLGDPFAPRSFSLIAIHKHGLRHEFAQEAIDEAHRVA
KTPLGEREDLTHLPIVAIDPADARDHDDAIWAEADGEGGWNAIVAIADVSFYVRPGSELD
REARARGNSVYFPDRVVPMLPEELSADICSLKAGKVRAAMACHLKIAKDGELKSWRFTRA
KICVAANIAYEDAQAAMDAAGEPQPFSIEGRGSSEGIELASSPCSMPEIEGPVSRELVEE
ALKPLWGCWRALLAARNKRGPLELDLPERVVQLDEKGRITSVAPRDRLDAHRLVEDYMIA
ANVAAARALEAKKTPVMYRVHEPPSREKLVALKDYLKTFGIEFALGQVVKPSTFTRVIER
VGDGDGREEIMEQLLRTQMQARYGPERLGHFGLALATYAHFTSPIRRYADLLVHRGLVKA
YGLGEGGLPQGDEERFEQIGEQISMLERRAMEAERDTIDRYVAAYLADRVGQLVDCRITG
VQPFGFFATVLDLGGDGLVLAKDLGNEYFRFDEGAKVLVGDETGETYRIGQKLQLRLAEA
NPVSGSLRFELPEGSYGGPQPARRDRVRTTSRRGRPPNIRHQSRKGR
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaaagcgccccgccggcctgcccagccgcaagcagatcctcgatttcatcgcc
acctccgaccagccggcagggaagcgcgaaatcgcgcgtgccttcggcctgtcgggcgcg
gacaagatccagctcaaggcgctgctcaaggacatggccgacgaagggctgatcgaccat
tcgcgcggccgcgccttccaccagatgggcggcgtgcccaaggtaacggtgctgcgcgtg
gtcgaggtcgacgacagcggaacggcgcgcgcggtgcccgagcaatggcatgccgaaacg
gcgccgcccaagatccgcatcgtggagcgcgagcgcaagggcgcgctcggcatcggcgac
cgcgtcctgtcgcggaccgagcagaagggcgatagctatatcgcgcacccgatgaagaag
ctcgccaagtcggcggagctggcgctgggggtggtgcgcaaggagggcgagcgcttctgg
ctatcaccggtcgacaagcgcgagcggcgcgaattgttcatcagcgatttgaaggatgcg
gagatcggagacctcgtgctgtgcgaggtgtcgggccgtccgccgcgggtgagcgcacgg
gtcgacgcggtcctcggcgacccgttcgcgccgcggagcttcagcctgatcgccattcac
aagcacgggttgcgccatgagtttgcgcaggaagcgatcgatgaggcgcatcgggttgcg
aaaacgccgctcggcgagcgcgaggacctgacgcatctgccgatcgtcgcgatcgatccg
gccgatgcgcgcgatcatgacgacgccatctgggccgaggcggatggcgagggtgggtgg
aacgcaatcgtcgcgatcgccgacgtcagcttctacgtccgccccggcagcgagctcgac
cgcgaggcgcgggcgcggggcaacagcgtctattttcccgatcgggtggtgccgatgctg
ccagaggaattgtcggcggacatctgctcgctgaaggcgggcaaggtgcgcgcggcgatg
gcctgccacctcaagatcgccaaggacggcgagctcaaaagctggcgatttacgcgggcc
aagatctgcgtggcggcgaacattgcctacgaggatgcgcaggcggcgatggatgcggcg
ggcgaaccccaaccgttctccatcgaggggaggggctcttccgagggcatcgaactcgcc
tcctcgccctgctccatgcccgagatcgaagggccggtatcgcgcgaactggtcgaggag
gcgctcaagcccctctggggctgctggcgcgcgctgctcgccgcccgcaacaagcgcggg
ccgctcgagctcgacctgcccgagcgcgtggtgcagctcgatgaaaagggccgcatcacc
tcggtcgcgccgcgcgaccggctcgatgcgcaccgactggtcgaggattatatgatcgcc
gccaatgtcgctgcggcgcgcgcgctcgaagcgaagaagacgccggtcatgtaccgcgtc
cacgaaccgccgagccgcgagaagctcgtcgcgctcaaggactatctcaagaccttcgga
atcgagttcgcgctcggccaagtcgtgaagccgagcacctttacccgtgtcatcgagcgc
gtcggcgacggcgacgggcgtgaggagatcatggagcagctgctgcgtacgcagatgcag
gcgcgctacgggccggagcggctcggccacttcggactcgcgctcgcgacctacgcgcat
ttcacttcgcccatccgccggtacgccgacctgctcgtccaccgcgggctggtgaaggcc
tacggccttggcgagggcggtcttccgcagggcgacgaggaacgctttgaacagatcggc
gagcagatctcgatgctcgagcggcgcgcgatggaggccgagcgcgatacgattgaccgc
tatgtcgcggcctatctcgccgaccgcgtcggccaactggtagattgcaggatcaccggc
gtgcagccgttcggtttctttgcgacggtgctcgaccttggcggcgacgggctggtgctc
gccaaggacctgggcaacgaatatttccgcttcgacgaaggcgccaaggtgctggtcggc
gacgagaccggcgagacctatcgcatcggccagaagctgcagctgcggctggcggaggcc
aatccggtttccggctcgctgcgcttcgaattgcccgaaggcagctatggcggaccgcaa
cccgcacgccgcgaccgcgttcgcacaacgagccgtcgcggacggccgcccaacatccgc
caccaaagtcgcaagggacgctga
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