Streptomyces lividans: SLIV_03995
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Entry
SLIV_03995 CDS
T03222
Symbol
rho1
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
slv
Streptomyces lividans
Pathway
slv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLIV_03995 (rho1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slv03021
]
SLIV_03995 (rho1)
03019 Messenger RNA biogenesis [BR:
slv03019
]
SLIV_03995 (rho1)
Transcription machinery [BR:
slv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SLIV_03995 (rho1)
Messenger RNA biogenesis [BR:
slv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SLIV_03995 (rho1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
Spore_III_AA
AAA_22
DUF3086
ATPase_2
ATPase
NACHT
AAA
Motif
Other DBs
NCBI-ProteinID:
AIJ11822
UniProt:
A0ABM5QVF5
LinkDB
All DBs
Position
856992..858128
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AA seq
378 aa
AA seq
DB search
MTTTLEHPPVQHAQADIASGVLDIETGGKGRLRGRNLQPEPADPALSPALIRRHGLRRGD
LVEGVCGDRRTLTDVVRVNGRTPDRRSRPHFADLTPLHPHERLRLEHPAAGLAGRVVDLL
APVGKGQRGLIVAPPKTGKTVLLQQFAAAVAGNHPEARLMVVLLDERPEEVTDMRRSVRG
EVYSSTFDRSARQHIALAELVIERAKRLVEAGEDVVILLDSLTRLCRAHNNAASSGGRTL
SGGVDAGALLGPKRFFGAARKAEEGGSLTILATALVETGSRADDFYFEELKSTGNMELRL
SREPASRRVFPAVEPVGSGTRREELLLSGAETTALRGLRRALVARDGQSGLETLLERLRR
TPDNATFLRQVQPTLPAG
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacactcgaacacccccctgtacagcacgcccaggccgacatcgcgagcggt
gtcctcgacatcgaaacgggcggcaaggggcgcctgcgcggcaggaacctccagcccgag
ccggccgacccggccctctcccccgcgctgatccgccggcacgggctgcgcaggggcgac
ctcgtcgaaggggtgtgcggcgaccggcgcaccctgaccgacgtcgtccgcgtcaacggg
cgtacgcccgaccggcggagccggccgcacttcgccgacctgaccccgctgcacccgcac
gagcggctgcggctcgaacacccggcggccggtctcgccggacgcgtcgtcgatctgctc
gccccggtcggcaagggccagcgcggactgatcgtcgccccgccgaagaccggcaagacc
gtcctcctccagcagttcgccgccgcggtggccggcaaccaccccgaggcccgcctgatg
gtggtgctgctcgacgaacgccccgaggaggtcaccgacatgcggcgctcggtacgcggc
gaggtctactcctcgaccttcgaccggagcgccaggcagcacatcgcgctcgccgagctg
gtgatcgagcgggccaagcggctcgtcgaggccggcgaggacgtcgtcatcctcctcgac
tccctcacccggctgtgcagggcgcacaacaacgccgcctcctccggcggccgcacgctc
agcggcggcgtcgacgccggggcgctgctgggtcccaagcggttcttcggcgcggcccgc
aaggcggaggagggcggttccctcaccatcctcgccaccgccctggtcgagaccggctcg
cgtgccgacgacttctacttcgaggagctgaagagcaccggcaacatggaactgcggctg
agccgggagccggcctcccgccgggtcttcccggccgtcgaaccggtcggctcgggcacc
cggcgcgaggagctgctgctgtccggtgccgagacgaccgccctgcgcgggctgcggcgg
gccctggtggcccgggacgggcagtccggcctggagaccctgctggagcggctgcgccgg
acgccggacaacgccacgttcctgcgacaggtccagccgacgctgcccgcgggctga
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