Streptomyces lividans: SLIV_08005
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Entry
SLIV_08005 CDS
T03222
Name
(GenBank) ribonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
slv
Streptomyces lividans
Brite
KEGG Orthology (KO) [BR:
slv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slv03016
]
SLIV_08005
Enzymes [BR:
slv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SLIV_08005
Transfer RNA biogenesis [BR:
slv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SLIV_08005
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
DUF1512_C
Motif
Other DBs
NCBI-ProteinID:
AIJ12615
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All DBs
Position
1837580..1838734
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AA seq
384 aa
AA seq
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MIADADALAEVTAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVACPD
LSGLGAAIADAEWVLHAATQDLPCLREIGMVPTRIFDTELAGRLAGFPRVGLGAMVENVL
GFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQEFDAI
ASAPPAEPRKDPWRRTSGMHKVRRRRQLAVVRELWQARDRIAQRRDVSPGKVLGDAAIVE
AALALPPNAHALAALNGFGRVNRRQLEQWQLSVDRARALSESQLPQPGQPVTGPPPPRAW
ADKDPAAAARLTAARAAVTALAERLSMPQENLITPDTVRRVCWEPPATVDAESVGAALAG
HGARPWQVEQVTPVLVAALSREAA
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgccgacgcggacgccctcgccgaggtgaccgccgccttcgccgccgggagcggc
cccgtcgccgtcgacgccgagcgcgcctccggctaccgctacggccagcgcgcgtacctg
gtgcagctgcgccgtgcgggtgcggggtccgcgctgatcgatccggtggcctgtcccgac
ctctccggcctcggtgcggcgatcgccgacgcggagtgggtgctgcacgcggccacccag
gacctgccgtgcctgcgggaaatagggatggtgcccacccgcatcttcgacaccgagctg
gccgggcggctcgccggcttcccgcgcgtcgggctcggcgcgatggtggagaacgttctg
gggttcgtcctggagaagggccactccgccgtcgactggtcgacgcgcccgctgcccgag
ccctggctgcgctacgccgcgctcgacgtcgagctgctggtcgacctgcgggacgccctg
gagaaggagctggaccgccagggcaagctggagtgggcccggcaggagttcgacgcgatc
gcctctgccccgccggccgagccgcgcaaggacccgtggcgccgcacgtccggcatgcac
aaggtgcgcaggcgccgccagctcgccgtggtgcgggagctgtggcaggcccgggaccgg
atcgcgcagcgccgggacgtctcccccggcaaggtgctcggggacgcggccatcgtcgag
gccgccctcgcgctgccgcccaacgcgcacgcgctggccgcgctgaacgggttcggcagg
gtgaaccgccggcagctggagcagtggcagctgtcggtcgaccgggccagggcactgtcc
gagtcgcagctgccacagcccggccagccggtgaccggccccccgccgccgcgggcctgg
gccgacaaggacccggccgccgcggcccggctgaccgcggcacgcgcggcggtgacggcg
ctggccgagcggctgagcatgccccaggagaacctgatcacgcccgacacggtgcgccgg
gtctgctgggagccgcccgcgacggtcgacgccgagtccgtgggcgcggccctcgccgga
cacggagcccggccctggcaggtggagcaggtgacaccggtactggtggcggcgctgagc
cgggaggcggcgtag
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