Streptomyces lividans: SLIV_21295
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Entry
SLIV_21295 CDS
T03222
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
slv
Streptomyces lividans
Brite
KEGG Orthology (KO) [BR:
slv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slv03016
]
SLIV_21295 (rtcB)
Enzymes [BR:
slv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SLIV_21295 (rtcB)
Transfer RNA biogenesis [BR:
slv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SLIV_21295 (rtcB)
Prokaryotic type
tRNA splicing ligases
SLIV_21295 (rtcB)
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AIJ15198
UniProt:
A0ABM5R4R3
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All DBs
Position
4707672..4708865
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AA seq
397 aa
AA seq
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MSYVEMSGAKVPIRMWADPATVEEGALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGNLSRLRSKIEQAIPVGRGMHDSPLEPG
RFHGLATGGWDDFWGRFDGVAEAVKFRHERAGKQMGTLGGGNHFVEVCTDTTGSVWLMLH
SGSRNIGKELAEHHIGVAQKLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
TLMMALLKDVVRKEFKKAKPVFEQEISAHHNYVAEERYDGMDLLVTRKGAIRAGSGDFGI
IPGSMGTGSYIVKGLGNAKSFNSASHGAGRRMSRNAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKPIDQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagatgtcgggcgcgaaggtgccgatccggatgtgggccgacccggcg
acggtcgaggagggtgcgctccagcagctgcgcaacgtcgcgaccctgccgtggatcaag
ggcctcgcggtcatgccggacgtgcactacggcaagggcgcgacggtcggctccgtgatc
gcgatgcgcggcgcggtgtgcccggccgcggtgggtgtcgacatcggctgcggcatgtcg
gcggtgaagacctccctgacggcgaacgacctgcccgggaacctgtcccggctgcgctcg
aagatcgagcaggcgattccggtggggcgggggatgcacgacagcccgctggagccgggg
cgcttccacgggctggcgacgggcggctgggacgacttctgggggcggttcgacggagtc
gccgaagcggtcaagttccgtcacgaacgggccggaaagcagatgggtacgctcggaggc
ggaaatcatttcgtcgaagtgtgcacagatacgaccggttctgtctggctgatgctgcac
tccggttcccgcaacatcggcaaggaactggccgagcatcacatcggcgtcgcccagaag
ctcccgcacaaccagggtctggtcgaccgcgacctcgcggtgttcgtcgcggacaccccg
cagatggccgcgtaccgcaacgacctgttctgggcgcaggagtacgcgaagtacaaccgc
acgctcatgatggcgctcctcaaggacgtggtccgcaaggagttcaagaaggccaagccg
gtcttcgagcaggagatcagcgcccaccacaactacgtggccgaggagcgatacgacggg
atggacctgctggtgacccgcaagggcgcgatccgcgcgggttccggggacttcgggatc
atccccggttccatgggcacgggttcgtacatcgtgaagggactcggcaacgccaagtcc
ttcaactccgcctcccacggcgccggtcggcggatgagccggaacgccgccaagcgccgc
ttctccaccaaggacctggaggagcagacgcggggtgtggagtgccgcaaggactccggc
gtcgtggacgagatcccgggcgcctacaagccgatcgaccaggtcatcgaccagcagcgc
gacctggtggaggtcgtggcgaagctgaagcaggtcgtctgcgtgaagggctga
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