KEGG   Parathermosynechococcus lividus: BRW62_03840
Entry
BRW62_03840       CDS       T05303                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
slw  Parathermosynechococcus lividus
Pathway
slw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:slw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BRW62_03840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slw03019]
    BRW62_03840
Messenger RNA biogenesis [BR:slw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BRW62_03840
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B RMMBL RNase_J_C Anti-Pycsar_Apyc1 Lactamase_B_2
Other DBs
NCBI-ProteinID: ATS18021
UniProt: A0A2D2Q0I8
LinkDB
Position
785773..787524
AA seq 583 aa
MSQSVANAALKIIPLGGLHEIGKNTCVFEYNDEIILLDAGLAFPTDGMHGVNIVLPDMTY
LRQNRDKIQGMIVTHGHEDHIGGIAFHLKQFDIPVIYGPRLAMALLQGKLEEAGVADRTE
IRTVRPRDMVRLGKNFLVEYIRNTHSIADSFSVAIHTPIGVIIHTGDFKFDFTPVDGECF
DIQRLAEHGEKGVLCLISDSTNSEVPGHTPSERSVFPNLDRAFSQAAGRIIFTTFASSVH
RLNMALELAQKYGRVVSVLGRSMLNVIAHARQLGYIHCPDNLFVPLHMIHKYPDHQVMYL
TTGSQGEPLSALTRISKGEHNKIKIREGDTVILSAHPIPGNTIAVVNMIDRLMMQGAKVI
YGREQGIHVSGHACQEDQKLMLALTKPKFFLPVHGEHRMLVKHAQTAQSMGIPPENMVII
DNGDVVELTRDSLRVVDKVPAGIELMDRGGLVKAHVLQERQQLAEEGIITVAVAVGSDGS
LKAAPEIHLRGVVTPIEPPAWQAWVHATVDTALSDRWSEYARNGEVDWAGIKAHLERELV
RLVRRELQGNATVLLLLQPIEVESSPTATTGIRRRRSTASLVS
NT seq 1752 nt   +upstreamnt  +downstreamnt
atgagtcaatccgttgctaatgccgctctgaaaattattcccttaggagggttacacgaa
atcggcaaaaacacctgcgtgtttgaatacaacgatgaaattatcctgctggatgctggg
ttagccttccccaccgatggtatgcatggggtgaacattgtcctgccggatatgacctac
ctgcggcaaaaccgcgacaaaattcagggaatgattgttacccacggccacgaagatcac
attggcggtattgcctttcacctcaagcaatttgatattcctgtcatctacgggccacgc
ttagcaatggcgctactccagggcaagcttgaagaggcaggggtggccgatcgcacggaa
attcgcaccgttcgtcctagggatatggtgcgccttggcaaaaacttcttagtggagtac
atccgcaatacgcactccattgccgatagtttctcggtggccatccacacccccatcggt
gtcattatccatacgggggattttaagtttgactttacccccgtcgatggtgagtgtttc
gatattcagcgcctagccgaacatggtgaaaaaggggtgctctgcctcattagtgactct
actaattccgaagttcctggccatactccctcggagcgatcggtctttcccaatctagat
cgtgcctttagtcaagcggcaggccggattatctttaccacctttgcctcctcggtgcat
cgcttaaacatggccttagaactggcgcaaaagtatggccgggttgtttcagtgttgggg
cgctctatgctgaatgtgattgcccacgcgcgacagttggggtacatccactgccccgat
aacctctttgtgcccctgcatatgatccacaagtaccccgatcaccaagtgatgtacttg
accactggctcgcaaggagagccgctctcggctttgacccgcatctccaaaggggagcac
aacaaaattaaaattcgcgaaggcgataccgtaattctctcggcgcacccaattccagga
aacaccattgcggtggtgaatatgattgaccggctgatgatgcaaggggctaaggtaatc
tatggccgtgagcagggaattcacgtgtcggggcatgcctgccaagaagatcaaaagctc
atgctggccttgacaaaaccaaagttctttttgccggtgcacggtgagcatcggatgcta
gtgaagcatgcccaaaccgctcagagcatggggattccccctgaaaatatggtgattatt
gataatggcgatgtggttgaactcacccgcgactcgctgcgggttgtggataaggtaccg
gcaggcattgagctgatggatcggggggggctggtcaaagcccatgtcctgcaagagcgt
cagcagttagcggaagaaggcattattactgtagccgttgcggtaggcagtgatggcagt
ctgaaagcggcgccagaaatccatttgcgtggtgtggtcacccccattgaacccccagca
tggcaagcatgggtacacgcgacggtggatactgccctaagcgatcgctggagtgagtat
gctcgcaacggtgaagtggattgggccggcatcaaagcacatctagagcgcgaactggtg
cgtttagtgcgccgcgagttgcaaggcaatgccactgtcttgttgttgttgcagcccatc
gaggttgagagcagccccacggcgacaaccggaattcgtcgccgccgcagcacggcttcc
cttgtgtcctaa

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