Parathermosynechococcus lividus: BRW62_03840
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Entry
BRW62_03840 CDS
T05303
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
slw
Parathermosynechococcus lividus
Pathway
slw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRW62_03840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slw03019
]
BRW62_03840
Messenger RNA biogenesis [BR:
slw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BRW62_03840
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ATS18021
UniProt:
A0A2D2Q0I8
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Position
785773..787524
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AA seq
583 aa
AA seq
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MSQSVANAALKIIPLGGLHEIGKNTCVFEYNDEIILLDAGLAFPTDGMHGVNIVLPDMTY
LRQNRDKIQGMIVTHGHEDHIGGIAFHLKQFDIPVIYGPRLAMALLQGKLEEAGVADRTE
IRTVRPRDMVRLGKNFLVEYIRNTHSIADSFSVAIHTPIGVIIHTGDFKFDFTPVDGECF
DIQRLAEHGEKGVLCLISDSTNSEVPGHTPSERSVFPNLDRAFSQAAGRIIFTTFASSVH
RLNMALELAQKYGRVVSVLGRSMLNVIAHARQLGYIHCPDNLFVPLHMIHKYPDHQVMYL
TTGSQGEPLSALTRISKGEHNKIKIREGDTVILSAHPIPGNTIAVVNMIDRLMMQGAKVI
YGREQGIHVSGHACQEDQKLMLALTKPKFFLPVHGEHRMLVKHAQTAQSMGIPPENMVII
DNGDVVELTRDSLRVVDKVPAGIELMDRGGLVKAHVLQERQQLAEEGIITVAVAVGSDGS
LKAAPEIHLRGVVTPIEPPAWQAWVHATVDTALSDRWSEYARNGEVDWAGIKAHLERELV
RLVRRELQGNATVLLLLQPIEVESSPTATTGIRRRRSTASLVS
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaatccgttgctaatgccgctctgaaaattattcccttaggagggttacacgaa
atcggcaaaaacacctgcgtgtttgaatacaacgatgaaattatcctgctggatgctggg
ttagccttccccaccgatggtatgcatggggtgaacattgtcctgccggatatgacctac
ctgcggcaaaaccgcgacaaaattcagggaatgattgttacccacggccacgaagatcac
attggcggtattgcctttcacctcaagcaatttgatattcctgtcatctacgggccacgc
ttagcaatggcgctactccagggcaagcttgaagaggcaggggtggccgatcgcacggaa
attcgcaccgttcgtcctagggatatggtgcgccttggcaaaaacttcttagtggagtac
atccgcaatacgcactccattgccgatagtttctcggtggccatccacacccccatcggt
gtcattatccatacgggggattttaagtttgactttacccccgtcgatggtgagtgtttc
gatattcagcgcctagccgaacatggtgaaaaaggggtgctctgcctcattagtgactct
actaattccgaagttcctggccatactccctcggagcgatcggtctttcccaatctagat
cgtgcctttagtcaagcggcaggccggattatctttaccacctttgcctcctcggtgcat
cgcttaaacatggccttagaactggcgcaaaagtatggccgggttgtttcagtgttgggg
cgctctatgctgaatgtgattgcccacgcgcgacagttggggtacatccactgccccgat
aacctctttgtgcccctgcatatgatccacaagtaccccgatcaccaagtgatgtacttg
accactggctcgcaaggagagccgctctcggctttgacccgcatctccaaaggggagcac
aacaaaattaaaattcgcgaaggcgataccgtaattctctcggcgcacccaattccagga
aacaccattgcggtggtgaatatgattgaccggctgatgatgcaaggggctaaggtaatc
tatggccgtgagcagggaattcacgtgtcggggcatgcctgccaagaagatcaaaagctc
atgctggccttgacaaaaccaaagttctttttgccggtgcacggtgagcatcggatgcta
gtgaagcatgcccaaaccgctcagagcatggggattccccctgaaaatatggtgattatt
gataatggcgatgtggttgaactcacccgcgactcgctgcgggttgtggataaggtaccg
gcaggcattgagctgatggatcggggggggctggtcaaagcccatgtcctgcaagagcgt
cagcagttagcggaagaaggcattattactgtagccgttgcggtaggcagtgatggcagt
ctgaaagcggcgccagaaatccatttgcgtggtgtggtcacccccattgaacccccagca
tggcaagcatgggtacacgcgacggtggatactgccctaagcgatcgctggagtgagtat
gctcgcaacggtgaagtggattgggccggcatcaaagcacatctagagcgcgaactggtg
cgtttagtgcgccgcgagttgcaaggcaatgccactgtcttgttgttgttgcagcccatc
gaggttgagagcagccccacggcgacaaccggaattcgtcgccgccgcagcacggcttcc
cttgtgtcctaa
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