Streptomyces lavendulae subsp. lavendulae: SLAV_09920
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Entry
SLAV_09920 CDS
T05314
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
slx
Streptomyces lavendulae subsp. lavendulae
Brite
KEGG Orthology (KO) [BR:
slx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slx03016
]
SLAV_09920 (rnd)
Enzymes [BR:
slx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SLAV_09920 (rnd)
Transfer RNA biogenesis [BR:
slx03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SLAV_09920 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ATZ23852
UniProt:
A0A2K8PAT8
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All DBs
Position
2327185..2328465
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AA seq
426 aa
AA seq
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MTDAQETAAGLRTTTGGGPPDEEVSSDGLPVPLLEPREGIPPVVADADGLARVVAAFAAG
TGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPVGCPDLSSLGEALSGTEWILHAA
TQDLPCLREIGMAPTSLFDTELAGRLAGFPRVGLGAMVESVLGYVLEKGHSAVDWSTRPL
PEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQEFDAIASAPPAPPRKDPWRRTSG
MHKVRRRRQMAVVRELWESRDRIAQRRDVSPGKVLGDAAIVEAALALPANVHALSALPGY
GQRMGRRQLDQWMAAVDRAKALPENELPQPGATPSGPPPPRSWADKDPAAAARLSAARSA
VSALAEGLNLPQENLITPDTVRRLCWEPPQRLEPGTVAEALAGYGARPWQIEQVTPVLVT
ALAATA
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgcccaagagaccgcagcaggcctgcgcaccaccaccgggggcggccccccg
gacgaagaggtttcgtccgatgggctgcctgttccgttgctagaaccccgcgaggggatc
cccccggtcgtggccgacgcggacgggctggcccgggtcgtcgcggccttcgccgcaggc
accggacccgtggccgtcgacgccgaacgcgcctccggataccgctacgggcagcgcgcc
tacctggtgcagctgcgccgcgaaggggccggctccgcgctgatcgaccccgtcggctgc
ccggacctctcctccctgggagaggcgctgtccggcaccgagtggatcctgcacgccgcc
acccaggacctgccctgcctgcgcgaaataggcatggcccccacctccctcttcgacacc
gagctggccggccggctggccgggttcccccgggtcggcctcggggcgatggtcgagagc
gtgctgggctacgtactggagaagggccactcggccgtcgactggtccacccgccccctg
cccgagccgtggctgcgctacgccgcgctcgacgtggaactgctggtggacctgcgggac
gcgctggagaaggaactcgaccggcagggcaagctggagtgggcccgccaggagttcgac
gcgatcgcctccgcgccgcccgccccgccgcgcaaggacccctggcgccgcacctccggc
atgcacaaggtgcgccggcgccggcagatggccgtcgtccgcgagctgtgggagtcccgc
gaccggatcgcccagcgccgggacgtctcccccggcaaggtgctcggcgacgcggcgatc
gtggaggcggccctggccctccccgcgaacgtccacgccctgtcggcgctgcccgggtac
ggacagcgcatgggccggcgccagctggaccagtggatggccgccgtggaccgggccaag
gccctgcccgagaacgagctgccgcagccgggggcgaccccgtcgggcccgccgccgccg
cgctcctgggcggacaaggacccggccgccgccgcgcgcctgtccgccgcccgcagcgcc
gtctctgcgctggcggaggggctgaacctgccccaggagaacctgatcactccggacacc
gtgcgccggctgtgctgggagcccccgcagcggctggagcccggcacggtcgccgaggcc
ctcgccggctacggcgcccgtccctggcagatcgaacaggtgacgcccgtgctggtcacg
gccctcgcggcaacggcctga
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