Streptomyces lavendulae subsp. lavendulae: SLAV_11650
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Entry
SLAV_11650 CDS
T05314
Symbol
sigD1
Name
(GenBank) RNA polymerase sigma-D factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
slx
Streptomyces lavendulae subsp. lavendulae
Pathway
slx02020
Two-component system
slx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SLAV_11650 (sigD1)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SLAV_11650 (sigD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slx03021
]
SLAV_11650 (sigD1)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
slx02035
]
SLAV_11650 (sigD1)
Transcription machinery [BR:
slx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SLAV_11650 (sigD1)
Bacterial motility proteins [BR:
slx02035
]
Flagellar system
Flagellar assembly proteins
Stator
SLAV_11650 (sigD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Sigma70_ECF
HTH_23
HTH_31
UPF0122
Motif
Other DBs
NCBI-ProteinID:
ATZ24194
UniProt:
A0A2K8PBS9
LinkDB
All DBs
Position
complement(2783934..2784770)
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AA seq
278 aa
AA seq
DB search
MPQHTSGSDRAAVPPAARGSVRSTAPSSLEVLWRSYKDSGDERLREQLILHYSPLVKYVA
GRVSVGLPPNVEQADFVSSGVFGLIDAIEKFDIERSIKFETYAITRIRGAMIDELRALDW
IPRSVRQKARAVERAYATLEAQLRRTPTEGEVAGEMGIGVEELHTVFSQLSLANVVALEE
LLHVGGEGGDRLSLMDTLEDHAADDPVEVAEDRELRRLLARAINTLPEREKTVVTLYYYE
GLTLAEIGNVLGVTESRVSQIHTKSVLQLRAKLADVGR
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcacacctcagggtccgaccgcgctgcggtgccccccgctgcccgcggcagc
gtgcggtccaccgcgccctcgtccctggaggtgctctggcgctcatacaaggactcgggc
gacgaacggctgcgggagcagctgatcctgcactactcgccgctggtgaagtacgtggcg
ggccgggtcagcgtcggcctgccgcccaacgtggaacaggccgacttcgtctcctccggg
gtcttcggcctgatcgacgcgatcgagaagttcgacatcgaacggtccatcaagttcgag
acgtacgccatcacccggatccgcggcgcgatgatcgacgaactgcgggcgctcgactgg
atcccgcgctcggtacggcagaaggcgcgcgccgtggagcgggcctacgccaccctggag
gcccagctgcggcggaccccgacggagggcgaggtcgcgggtgagatggggatcggggtg
gaggaactccacacggtcttcagccagttgtccctcgccaacgtggtcgccctcgaagag
ctgctgcacgtcggcggggagggcggcgaccgcctctccctgatggacaccctggaggac
cacgccgccgacgaccccgtcgaggtggccgaggaccgggagttgcgccggctgctcgca
cgggcgatcaacacgctccccgagcgggagaagacggtggtgaccctctactactacgag
ggcctgaccctcgccgagatcggcaacgtgctgggcgtgaccgagagccgcgtcagccag
atccacaccaagtccgtgctccagctgagggccaagctggccgacgtcggccggtga
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