Streptomyces lavendulae subsp. lavendulae: SLAV_16000
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Entry
SLAV_16000 CDS
T05314
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
slx
Streptomyces lavendulae subsp. lavendulae
Pathway
slx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SLAV_16000 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slx03021
]
SLAV_16000 (rpoC)
03400 DNA repair and recombination proteins [BR:
slx03400
]
SLAV_16000 (rpoC)
Enzymes [BR:
slx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SLAV_16000 (rpoC)
Transcription machinery [BR:
slx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SLAV_16000 (rpoC)
DNA repair and recombination proteins [BR:
slx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SLAV_16000 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RnfC_N
TarH
Motif
Other DBs
NCBI-ProteinID:
ATZ25054
UniProt:
A0A2K8PE85
LinkDB
All DBs
Position
complement(3702316..3706215)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDDERRQRDLPSLEAHVSVERQQIENRRDADLEGRAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLEEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDVKGE
GRAFGSTAEAIMAFDAGELALQSSVDIRFPVGTIPPRGWVAPVAEEGEQEFQPGDSFRLK
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFHWAT
RSGVTVAISDVVVPEAKKEIVAGYEAKDEKVQKQYERGLITKEERTQELIQIWTQATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLT
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLKIGVKD
EAGVLRKADDVETSVYARMLAEDVVIDGKVIAPANVDLGDVLIDALIANGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKIVITPDDGSEETAFPISKRAKV
IVHEGDHVEVGQKLTMGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNG
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgccaccgcggacgacatc
cgaacctggtcgcacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtcctacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgttgtggcgtc
gaggtcacgcgcgccaaggtgcgccgtgagcggatgggccacatcgagcttgccgctccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctgggctacctgctggacctc
gcgccgaaggacctcgaaaaggtcatctacttcgccgcgtacatgatcacgttcgtcgac
gacgagcgccgtcagcgcgacctgccgtcgctggaggcccacgtctccgtcgagcgccag
cagatcgagaaccgccgtgacgcggacctcgaaggccgtgccaagaagcttgagaccgac
ctggccgagcttgaggccgagggtgcgaaggccgacgtgcgccgcaaggtgcgcgagggt
gccgagcgcgagatgaagcagctccgtgaccgcgcccagcgcgagatcgaccgcctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggaccttgagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggtacgtacttcgacggttcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctggaggaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtcctggactgcgtcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgcctgaagcgccttctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctccaggaggcggtcgacgcc
ctcttcgacaacggccgtcgtggtcgcccggtgacgggccccggcaaccgtccgctgaag
tccctcagcgacatgctgaagggcaagcagggtcgattccgtcagaaccttctcggcaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgcggccgc
acggtcgtctacgacgtcctcgaagaggtcatcgccgagcacccggtcctcctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccccagctggtcgaaggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcacgatgccgacgcaggac
atggtcctgggtctgttcttcctgaccaccgacggtgagctccgtgacgtcaagggcgag
ggccgtgcgttcggctccaccgccgaggcgatcatggctttcgacgccggcgagctcgcg
ctgcagtcgtccgtcgacatccgcttcccggtgggcaccatcccgccgcgcggctgggtg
gcgccggtcgccgaagagggcgagcaggagttccagccgggcgacagcttccgtctgaag
acgaccctgggccgtgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggcggagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttccactgggcgacc
cgttcgggcgtcaccgtggccatctccgacgtcgtggttcccgaggcgaagaaggaaatc
gtcgcgggctacgaggccaaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggaagagcgcacccaggagctcatccagatctggacgcaggcgaccaacgaggtc
gccgaggcgatgaacgcgaacttccccaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcgacagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagaccatcccgcgtccgatcaaggcgtccttccgtgagggcctcacc
gttctggagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgccctg
cgtaccgccgactcgggttacctcacccgtcgtctggtggacgtctcgcaggacgtcatc
atccgcgaggaggactgcggcaccgagcgcggcctcaagctcaagatcggtgtcaaggac
gaggcgggtgtcctccgcaaggcggacgacgtcgagacctccgtgtacgcccgcatgctg
gccgaggacgtcgtcatcgacggcaaggtcatcgcgccggcgaacgtggacctcggcgac
gtgctcatcgacgccctcatcgcgaacggcgtcgaggaggtcaagacccgctcggtcctg
acctgcgagtccgcggtcggcacctgtgccttctgctacggccgctcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacg
cagggtctgccgcgtgtcgtcgagctcttcgaggcccgtaccccgaagggtgtcgccccg
atctccgaggccgccggccgcgtgcggatcgaggagaccgagaagacgaagaagatcgtc
atcacgcccgacgacggcagcgaggagacggccttcccgatctccaagcgcgccaaggtc
atcgtgcacgagggcgaccacgtcgaggtgggccagaagctcaccatgggtgccaccaac
ccgcacgacgtgctgcgcatcctcggccagcgtgccgtccaggtccacctggtcggcgaa
gtccagaaggtctacaactcgcagggcgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcggagctcctgccg
ggcgagctcgtcgagcgctcgaagttcgagaccgagaaccgtcgcgtggtcaccgagggc
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggcgacg
gaatcctggctgtcggccgcctccttccaggagacgacccgagtcctgacggatgcggcg
atcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctgtcccgctaccgcaacatccgggtcgagcccaccgaagag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgcccttcggc
accggctccggccaggctgtcccgctggaggactacgactacggcccgtacaacggctga
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