Streptomyces lavendulae subsp. lavendulae: SLAV_21630
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Entry
SLAV_21630 CDS
T05314
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
slx
Streptomyces lavendulae subsp. lavendulae
Brite
KEGG Orthology (KO) [BR:
slx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slx03016
]
SLAV_21630 (rtcB)
Enzymes [BR:
slx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SLAV_21630 (rtcB)
Transfer RNA biogenesis [BR:
slx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SLAV_21630 (rtcB)
Prokaryotic type
tRNA splicing ligases
SLAV_21630 (rtcB)
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Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ATZ26143
UniProt:
A0A2K8PK21
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Position
4863308..4864501
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AA seq
397 aa
AA seq
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MSYVEVSGANVPIRMWTDPASVEDSAMRQLQNTAGLPWIKGLAVMPDVHYGKGATVGSVI
AMKDAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSKLRSRIEQAIPVGAGMHREAVDPV
RLYGFGDSGFGDLWERFDYVADSVKFRRERAMRQMGSLGQGNHFWELCIDSSGSVWIMLH
SGSRNIGNELADFHINVARGLAHNQGLVDRDLAVFLAATPEMQAYRSDLFWAQEYAKFNR
RVMMSLSKEVIRREFRKAKVSFDQEISCHHNYVAEERYDGMDLLVTRKGAIRAGGGEYGI
IPGSMGTGSYIVKGLGNEKSFNSASHGAGRKMSRTAAKKRFSARDLAEQTRGVECRKDSG
VVDEIPGAYKSIEQVIDQQTDLVQVVAKLKQVICIKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtagaggtgtccggggccaacgtcccgatccggatgtggaccgatccggcg
tcggtcgaggacagcgccatgcggcagttgcagaacacggcgggcctcccctggatcaag
ggcctggcggtgatgccggacgtccactacggcaagggcgccacggtcggctcggtcatc
gccatgaaggacgcggtctgcccggcggcggtgggcgtcgacatcggctgcggcatgtcg
gcggtgaagacctccctgacggcgaacgacctcccgggggacctgtcgaagctgcggtcg
cggatcgagcaggcgattccggtgggggcggggatgcaccgcgaggccgtggacccggtg
cggctgtacggcttcggggactccggcttcggggacctgtgggagcggttcgactacgtc
gcggactcggtgaagttccggcgggagcgggccatgcggcagatgggaagccttggtcaa
gggaatcacttttgggaactttgcattgattcgtctggttcggtctggatcatgttgcat
tcgggttcccggaacatcggcaacgagctcgcggacttccacatcaacgtcgcacgtggc
cttgcgcacaaccaggggctggtggacagggacctcgcggtgttcctcgcggcgactccc
gagatgcaggcctatcggagcgacctcttctgggcgcaggagtacgcgaagttcaaccgt
cgcgtgatgatgagcctgtccaaggaagtcatccgcagggagttccgcaaggccaaggtc
tccttcgaccaggagatcagctgccaccacaactacgtggcggaggagcggtacgacggc
atggacctgctcgtcacgcgcaagggcgcgatccgcgccggcggcggcgagtacgggatc
atcccgggctcgatggggacgggctcgtacatcgtgaagggcctcggcaacgagaagtcc
ttcaactccgcctcgcacggagcgggccgcaagatgagccgtaccgcggcgaagaagcgc
ttctcggcgcgggacctggcggagcagacccggggcgtggagtgccgcaaggactccggt
gtcgtggacgagatccccggcgcctacaagtcgatcgagcaggtcatcgaccagcagacc
gacctggtgcaggtcgtggcgaagctcaagcaggtcatctgcatcaagggctga
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