Solanum lycopersicum (tomato): 100462655
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Entry
100462655 CDS
T02665
Symbol
MSH2
Name
(RefSeq) mismatch repair protein
KO
K08735
DNA mismatch repair protein MSH2
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100462655 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
100462655 (MSH2)
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100462655 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Glyco_hydro_57
Motif
Other DBs
NCBI-GeneID:
100462655
NCBI-ProteinID:
NP_001234067
UniProt:
D6QY20
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Position
6:complement(45436628..45443662)
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AA seq
943 aa
AA seq
DB search
MDENFEKQGKLPELKLDARQAQGFLSFFKTLPKDVRAVRLFDRRDYYTAHGDDATFIAKT
YYHTTTALRQLGNGVGALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWKLVKSG
TPGNFGSFEDILFANNEMQDSPVIVALAPKFDQNGCTVGLGYVDITKRVLGLAEFLDDSH
FTNLESALVALGCRECLVPTETGKSSESRPLYDAISRCGVMVTERKKTEFKGRDLVQDLG
RLVKGSVEPVRDLVSSFECAAGALGCILSYAELLADDSNYGNYTVKQYNLDSYMRLDSAA
MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAF
VEDAALRQDLRQHLKRISDIERLTHNLERKRASLLHVVKLYQSGIRIPYIKSVLERYDGQ
FAPLIRERYIDSLEKWSDDNHLNKFIALVETAVDLDQLENGEYMISSAYDPNLSALKDEQ
ETLEQQIHNLHKQTANDLDLPIDKSLKLDKGTQFGHVFRITKKEEPKVRRQLNSHYIVLE
TRKDGVKFTNTKLKKLGDRYQKILDEYKSCQKELVARVVQTVASFSEVFEGLAGSLSELD
VLLSFADLASSCPTAYSRPNISPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTYIRQVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLKGVS
TFMQEMLETASILKGATNRSLVIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATH
FHELTALANENGNNGHKQISSVANFHVSAHIDSSSRKLTMLYKVQPGACDQSFGIHVAEF
ANFPQSVVALAREKASELEDFSPRAMMPNDCKEVVSKRKREFDPHDVSRGTARARQFLQD
FTQLPLDKMDLKQALQQLSQMKTDLEKNAVDSQWLQQFFSSSN
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaattttgagaaacagggcaagcttccagagcttaaacttgatgcgaggcaa
gctcaagggtttctttcattcttcaaaaccctacccaaggatgttagggcagttcgtcta
ttcgatcgtagggactattatactgctcatggagatgatgcaactttcattgcaaagaca
tattaccatacgacaactgctttacggcagttgggtaatggagttggtgcgctttccagt
gttagtgtgagtagaaacatgtttgaaacaatagctcgtgacattctcttggagaggatg
gatcgtactcttgaattgtatgagggcagtggttcaaattggaaactggtcaaaagtgga
accccaggaaatttcggaagttttgaggacattctgtttgctaataatgaaatgcaagat
tctccagtgattgttgctcttgcgccaaaatttgatcagaatggatgtacagttgggtta
ggctatgttgatattactaagagagtccttggtttagcagaatttctagatgatagccac
ttcaccaatttggagtctgctttggttgcccttggttgcagagaatgtcttgtaccaaca
gagactgggaaatccagtgagagcaggcctctatatgatgcaatatcgagatgcggggtg
atggtaactgaaagaaagaaaactgaatttaaaggtagggatttggtacaggatctgggt
aggcttgtcaagggttcagtagaacctgttcgagatctagtctctagttttgaatgtgca
gcaggtgctttggggtgcatactttcctatgcagaattacttgcggatgacagcaattat
ggaaactacacagtcaaacaatacaacctcgatagttacatgagattagattctgctgct
atgagagcactgaatgttatggagagcaaatcagatgctaataaaaattttagcttgttt
ggtctcatgaatagaacctgtactgctggaatgggtaaaaggttattgcacatgtggctg
aaacagccgttactagatgtagatgagattaactgtagattggatttagttcaagcattt
gtggaggatgctgcacttcgccaagatttgaggcagcatctgaaaagaatttcagatatt
gagcggctgacacacaatcttgagaggaaaagagccagtttattgcacgttgtaaaactc
tatcagtcaggcatcagaataccatatatcaaaagtgttttggaacgttatgatgggcaa
tttgcaccgctaatcagggaaaggtatattgattctcttgagaaatggagtgatgataat
catctgaataagttcattgctcttgtggaaactgctgttgaccttgatcaacttgagaat
ggagaatacatgatttcttctgcatatgacccaaatttatctgctctgaaggatgagcaa
gagacattggagcaacagattcataatttgcacaaacaaactgccaatgatcttgatcta
cctattgataagtctcttaaattagataaaggaacacaatttggacatgtctttagaatt
accaagaaagaagaaccaaaagtcaggaggcagctaaactctcactacattgttcttgaa
acacgcaaggatggggtaaaattcaccaatacaaaactcaaaaaactaggagatcggtac
cagaagatcttagacgagtataagagctgtcagaaagaactggtagctcgggtagttcaa
acagttgcgagtttctctgaggtgtttgaaggtttagctggttcactttctgagttggat
gtgctactgagttttgcggatttggcttccagttgcccaactgcctactcaagaccaaat
atcagtccaccagatacgggagatattatacttgaagggtgtagacatccttgtgtggaa
gctcaagactgggtcaacttcatccctaatgactgtagactagttagaggagaaagttgg
tttcagattatcacaggccctaacatgggtggaaagtctacctacattcgtcaggttggt
gtgaatgtcctgatggcccaagttggctcatttgttccatgtgacaatgctaccatttct
attcgtgattgcatttttgctcgtgttggcgctggagattgtcagctgaagggggtttct
acttttatgcaagagatgcttgagactgcatcgatcttgaaaggagctactaatagatcg
ttggttataattgatgagttgggccgtgggacgtcgacttatgatggctttggtttagct
tgggctatttgtgagcacattgttgaagaaattaaagcaccaacattgtttgcaactcac
tttcatgagctgactgcattggccaatgagaatggaaacaatggacataagcaaatttcc
agtgtggcaaattttcatgtcagtgcacacattgactcttctagtcgcaagctaactatg
ctttacaaggttcaaccaggtgcttgtgatcaaagttttggtattcacgtagcagagttt
gccaattttccacaaagtgttgtggccctggccagagaaaaggcttctgagttggaggat
ttctctcctcgtgctatgatgccaaatgactgtaaagaggtagtctcaaagcggaagagg
gaatttgacccacatgatgtgtctagaggtactgcccgagctcgtcaattcttacaggat
ttcactcagttgccactggataagatggatctaaagcaggcgttgcaacagttgagccaa
atgaagactgaccttgagaagaatgcagttgacagtcagtggcttcagcagttctttagt
tcttcaaattag
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