Solanum lycopersicum (tomato): 100462656
Help
Entry
100462656 CDS
T02665
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100462656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
100462656
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100462656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
100462656
NCBI-ProteinID:
XP_004242928
LinkDB
All DBs
Position
7:12645188..12691978
Genome browser
AA seq
1082 aa
AA seq
DB search
MQRQKTLLSYLKKPSPEDQSSGDNTINGRKFPSRNAVPNSSTIDLKEEILGIETPPEKVP
LPFNNGDNSSVFSSIMHKFNREKPRNIAKGDPCKISSVFTKNEGSDGLGNASVSLQSDTN
RSSVCSNGKGNQEGKGLVSLIPSDDHGFEPETPSMQPYEPGLKRVQDNICSSGDKSDCFS
LNASKRIKSLKGLNFKRKNLEEEFEMTSKFEWLHPSQIKDANGRRPGDPLYDKQTLYIPP
DVLRKMSASQKQYWDVKCKYIDIVLFFKVGKFYELYELDAEIGHKELDWKMTQSGVGKCR
QVGISESGIDEAVQKLLARGYKVGRMEQLETSEQAKSRGSTSVIRRKLVHVLTPSTTSEG
NIGPDAVHLLAVKETCKELGNGSTTIGFAFVDCAALKVWVGSVEDDASCAALEALLMQVS
PKEVIFNARGLSKDAQKALKKYSSTGPAAPLLSPVQPGADFVDPAEVKNFLDLKGYFKRS
CNKWDHAFDGEDHDVALCALGSLVNHLERLMLNEVLHNGDILSYEVYKGCLKMDGQTLVN
LEIFNNNVDGSPSGTLYRYLDNCVTLPGKRLLRKWICHPLKDVEKINHRLDVVDKLVDNA
TLSTAQYLRKLPDLDRLLGRVKASIQSSEALLLPLIGAKILKQRIKVFGLLVKGLRVGLD
LLRLLQKECLTASLAKVVSLPVLDGDNGLDKFLTQFEAAIDSDFPNFQDHNATDFDTETL
SILMELFIEKATEWSQLIYAISCVDVLRSFSITAKFSSGVMCRPVILPLSKPSNICNDTG
GSTLNIKGLWHPYALGESGGLPVPNDLHLGGNTNIRYPRTLLLTGPNMGGKSTLLRASCL
AVIMAQLGCYVPGETCVLSLVDIIFTRLGATDRIMTGESTFFIECTETASVLQNATYNSL
VLLDELGRGTSTFDGYAIAYAVFRHLVETVNCRLLFATHYHPLTKEFASHPHVALQHMAC
SFKLKSQSSSPTEQELVFLYRLTSGACPESYGMQVALMAGIPKTVVESALSAAQVMKKMN
RESFKSSEQRANFSTLHEQWFTTLLDISKTDGGLNSDNDDDNDLFDTLFCLWHELKADRS
TC
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggcagaaaactttactttcttacctcaagaaaccttcgccggaggaccaaagc
tccggcgataacacaatcaatggacggaaatttccaagtagaaatgcagttccgaattct
tccaccatagaccttaaggaagaaatattgggaattgaaactcctcctgagaaggtgccg
ctcccgttcaacaatggggataactcttctgttttctcttctattatgcacaagtttaac
agagaaaaaccacggaatattgcgaaaggtgatccatgtaagatatcctctgtttttaca
aaaaatgaaggatcagacgggctgggaaatgcttctgtttccttacaatcagacactaat
agaagttctgtctgttctaatggaaagggtaatcaagagggtaaaggattagtatctctt
attccaagtgatgatcatggttttgagccagaaacaccaagtatgcaaccttatgaacct
ggattaaagcgagtccaagacaacatttgttcctcaggtgataagagtgattgcttttca
ttgaatgcaagcaagaggattaaaagtcttaagggcttgaattttaaaaggaagaatctc
gaggaggagtttgaaatgactagcaagtttgagtggcttcatccatctcaaatcaaggat
gcgaatggtagaaggccaggggacccactctatgataagcaaacactctatattccacct
gatgtgttgagaaaaatgtccgcttctcagaagcagtactgggatgtcaaatgtaaatac
attgacattgtgcttttctttaaagtgggaaaattttatgagctgtatgaactagatgct
gaaattggtcacaaggagcttgattggaaaatgacgcaaagtggcgtgggaaaatgtcga
caggttggtatatctgaaagtggaattgatgaagctgttcagaagctcctagcgcgaggg
tacaaagttggacggatggaacagttggaaacatccgagcaagcaaaatctagaggctct
acttctgttattcgtagaaaactagttcatgtactcaccccttctacgacaagtgagggt
aatattgggcctgatgcagttcatcttcttgccgtcaaggagacttgcaaggagctgggg
aatggttcaaccactattggatttgcttttgtcgattgtgctgctctgaaagtttgggtt
ggttccgtcgaggatgatgcatcttgtgcagctttggaagctttgctgatgcaagtgtca
ccgaaggaagttatattcaatgcaaggggtttgtcaaaggatgcccagaaagctctgaaa
aagtattcatcaacaggtcctgcagcaccacttctatctccagttcagccaggtgcagat
tttgttgatcctgcagaagtgaaaaatttcctcgacttgaaaggttactttaaaagatct
tgtaataagtgggatcacgcctttgatggagaggaccatgatgttgctttatgtgctctt
gggagtcttgttaatcatttagagcgattgatgttaaatgaggtcttacataatggtgat
attctatcatacgaagtatataagggttgcctcaaaatggatggacagacacttgtcaat
cttgaaatcttcaacaataatgtcgatgggagtccatcaggtactttatacaggtatctg
gataactgtgttacattacctgggaagcgacttttaagaaaatggatttgtcaccccctc
aaagatgtagagaaaatcaatcataggcttgatgtagttgacaaacttgttgacaatgct
acattatccactgctcaatatcttcgcaagcttccagatttggataggctgcttggacgg
gttaaggctagcattcaatcttctgaagcactccttctgcccttgattggtgccaagata
ttgaagcagcggatcaaagtgtttgggttgctcgttaaagggctacgggttgggctggac
ttgttaagattgttgcagaaggaatgtctgaccgcttccctagctaaagttgtatccttg
cctgttcttgatggtgacaatggtcttgataagttcctgacccaatttgaagcagcaatt
gatagtgacttccccaattttcaggaccataatgctactgattttgatactgaaacgcta
tccattttgatggagctatttattgagaaggctactgagtggtctcaattaatttatgcc
ataagttgtgttgatgtattaagatcattttccattactgcaaaattttcttctggagtc
atgtgtagaccagtgatcttgcctctttcaaagccgtcaaatatctgcaatgacactggt
ggatcaacactaaacatcaaagggttgtggcatccatatgctcttggtgaaagtggggga
cttcctgttcctaacgatctccatcttggagggaatacaaatatccgctatcctcgaact
ttactattgaccggaccaaatatgggtggaaagtcgactcttttacgtgcctcttgtctg
gctgtcataatggctcagttgggttgctatgtgcctggagaaacatgtgtgctttcactt
gtggacatcatctttacacgtcttggagccactgatcgaatcatgactggtgaaagtacc
ttcttcattgaatgcacggagaccgcatcagttcttcaaaatgctacgtataattccctt
gttcttttggatgaattgggtagaggaacaagcacttttgatggatatgctattgcatat
gctgtattccgacaccttgtagagacggtgaactgccgcttactgtttgccacacattat
catccactcactaaagagtttgcttctcatccacatgtggcattacaacacatggcctgc
tctttcaagttgaaatctcaaagttcatctccaacagagcaagaactggtgttcctctac
cgcctaacctctggagcatgcccggagagctatgggatgcaagtagcccttatggctgga
ataccgaaaactgtggttgaatctgcattgagtgcggcgcaagtaatgaagaaaatgaac
agagaaagttttaagtcttctgaacaaagagctaacttttcaacactgcatgagcaatgg
ttcacgactcttctggatatctcgaagacggatggtggactaaatagtgacaatgatgac
gacaatgacctatttgatacattgttttgtttgtggcatgaacttaaggctgatagatcc
acttgctga
DBGET
integrated database retrieval system
