Solanum lycopersicum (tomato): 100736502
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Entry
100736502 CDS
T02665
Symbol
RPB2-2
Name
(RefSeq) RNA polymerase II second largest subunit
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03020
RNA polymerase
sly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100736502 (RPB2-2)
09124 Replication and repair
03420 Nucleotide excision repair
100736502 (RPB2-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
100736502 (RPB2-2)
03400 DNA repair and recombination proteins [BR:
sly03400
]
100736502 (RPB2-2)
Enzymes [BR:
sly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100736502 (RPB2-2)
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100736502 (RPB2-2)
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100736502 (RPB2-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
100736502
NCBI-ProteinID:
NP_001234825
UniProt:
Q1L5Z1
LinkDB
All DBs
Position
12:3986579..3995658
Genome browser
AA seq
1205 aa
AA seq
DB search
MMYGDNEYVDDRDMVQVEDEGGEGRGDVDEDEDEDESREITQDDAWAVISSYFEEKGLVR
QQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPSRQPDFVETIYKIKFTQIYLSRPMMT
ESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKGHDYEEVTENQEFTKVFIGKVPIM
LRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEKVLIAQEKMSSNHVYVFKKRQPNK
YAYVAEVRSISEGQNKAPSGMFVRMLSRSNSKGAYGQYIRATLPYIRTEIPIIVVFRALG
FVADKDILAHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGFTREKRIK
YAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYANKRLDLAG
PLLGGLFRMLFRKLTRDVRSYVQKCVDGGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN
AAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQ
ACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHR
NPDLLVRTLRQLRRQVDVNTEVGVVRNINLKELRLYTDYGRCSRPLFIVDKKRLRIKKND
IIALQMRESSEDSGWHDLVAKGFIEYVDTEEEETTMIAMTINDLTNSRVNPDEAYAETYT
HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
QKPLVTTRAMEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSY
RDEEKKMGTLVKEDFGRPDREHTMGMRHGNYDKLEDDGFAPPGTRVSGDDVIIGKTTPIS
QDEAQGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFS
SRHGQKGTIGMTYTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHIGKE
GDATPFTDVTVDSISRTLHNCGYQMRGFERMYNGHTGRVLPAMIFLGPTYYQRLKHMVDD
KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVH
VCQQCGLMAIANLKKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRMLTKELK
PSNRK
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgatgtatggagataatgaatatgttgatgatagagatatggtgcaagtagaagacgaa
ggaggagaaggaagaggtgatgttgatgaagatgaagatgaagatgagtcacgggagata
actcaggacgatgcatgggctgttattagttcatattttgaagaaaaaggacttgtgagg
caacaattggattcgtttgatgagtttatacagaatacaatgcaggaaattgttgatgaa
actgctgatattgaaattcgacctgaatctcagcataatcctagtcgtcaacctgatttc
gttgagacgatctacaagatcaagtttactcagatatacttgagtagacctatgatgaca
gagtctgatggagagactaatactttgtttccaaaggccgcaaggttaagaaacttgaca
tactcttccccgctatatgttgatgtgaagaaggaagtaataaagaaaggtcatgactat
gaagaagtgacagaaaatcaggaatttaccaaagttttcatyggaaaggttcctataatg
cttcggtcaagctactgcagcttgtataacctgtcggagaaagatttaacagagttggga
gagtgcccgtatgatcaaggtggatacttcatagtcaatgggagtgagaaagttctgatt
gcacaggaaaaaatgagcagtaatcatgtttatgtattcaagaaaagacaaccaaacaag
tatgcttatgtggcagaagttcggtctatatccgagggccaaaacaaggcacctagtggc
atgtttgttaggatgctttctaggtctaattctaagggggcgtatggccagtatattcgt
gccactcttccatacatacggactgaaattccaattatagtagtcttcagggcattagga
tttgtcgctgacaaggatatattggcgcatatttgttatgattttgctgacactcagatg
atggaattacttcgcccttccttggaagaagctttcgtgattcaaaatcagcaggtggca
cttgactatattggcaaaagaggatctactgttggtttcacaagagaaaagagaatcaag
tatgccaaagagattctccaaagagaaatgcttccgcatgttggtactagagaatattgt
gaaactaagaaagcctactattttggctacatcatccatcgtcttttactctgtgtattg
ggacggaggcctgaagatgatagggatcattatgctaacaaaagactggatcttgctggc
cctttacttggtggcttattccgaatgctattcaggaagctaacaagggatgtgagatcc
tatgttcaaaagtgtgttgacggtggaaaggatgtgaatttgcaatttgccattaaagca
aaaacaattacaagtggacttaagtattctcttgctaccgggaactggggacaagcaaat
gctgctggtaccagggcaggagtttcacaggttttgaatcgtttgacatttgcatctact
ctttctcacttgcgtagattgaactcaccgatagggcgggagggtaaattggcaaaacct
agacagcttcataattctcactggggaatgatgtgtccagcagaaacgcccgaaggacaa
gcatgtggattggtaaagaaccttgctttaatggtgtatataacagtaggatcagcagca
aatccaattttggagtttctagaagagtggagtacagaaaattttgaggaaatatctcct
gcggttattccccaatctaccaagatttttgtaaatggttgttgggttggcattcatcgt
aatccagatctgttggttaggacactgagacagctgaggagacaggttgatgttaatact
gaagttggagttgtccgaaatataaatctgaaggaactgcgcctgtatacagattatgga
cgttgtagtaggccgttattcatagtggataaaaagagattgagaataaagaagaatgat
attatcgcactgcaaatgagggagtcatctgaagattctggctggcatgatcttgtggcg
aaaggatttattgagtatgttgatactgaggaggaagagactacaatgatcgcaatgacc
ataaatgatcttacaaattcaagggtgaacccagatgaggcttatgctgagacctacaca
cactgtgaaatccatccatctttgatattgggagtgtgcgcttcaatcataccatttcca
gatcataatcagtcccctcgtaacacatatcaatcagctatgggaaagcaagcaatgggg
atttatgtcaccaattaccaatttcggatggatacattggcctatgtactgtattatcca
caaaagcctcttgttactacgcgagctatggagcatttgcatttcagacagcttccagct
ggcattaatgccattgttgccattacctgttattctggctataaccaagaagattctgtc
atcatgaatcaatcttcaattgaccgtggcttattccgctctctatttttccgttcatat
agggatgaagagaaaaagatgggaacgcttgttaaagaggattttgggcgtcctgataga
gaacataccatgggaatgcgacatggaaattacgataaattagaagatgatggatttgca
cctcctggaacaagagtttctggtgatgatgtcataattggaaagaccacacctatttct
caagatgaggctcaaggacaatctgcaagatacacgcgcaaagaccatagtaccagtcta
cgacatagtgaaactggaattgtggatcaggttcttttgacaacaaatgcagatggattg
agatttgtcaaaataaggatgagatctgtcagaattccacagattggagacaaattcagc
agccggcatggacaaaaaggaaccattggaatgacttatacacaagaagacatgccatgg
tccgctgaaggcatcaccccagatatcattgtgaatcctcatgctatcccttctcgtatg
acaataggtcagctagttgagtgcatcatggggaaggttgctgctcacattggaaaggaa
ggagatgctaccccttttactgatgttactgtggatagtatcagcagaactctacacaat
tgtggctatcagatgcgtggttttgagagaatgtataatggtcatacaggtcgtgtactg
cctgcaatgatattcttggggccaacttactaccagagactgaagcacatggtggatgat
aagattcattctcgtggccgtggtcctgtgcagattctcactagacagcctgctgaaggg
agatctcgtgatggaggactacgatttggggagatggaacgtgactgtatgatagctcat
ggagctgcacacttccttaaagagagactgtttgatcaaagtgatgcttacagagttcat
gtatgccagcaatgtggtttaatggctattgcaaatctgaaaaagatgtcattcgagtgc
agatcttgtaggaataaaactgacaatgttcaggtgtatattccctatgcctgcaagctt
ctgattcaagagctcatgtcaatggcaattgccccaagaatgcttacaaaggaactgaaa
ccatcaaatcgaaagtaa
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integrated database retrieval system
