Solanum lycopersicum (tomato): 101243705
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Entry
101243705 CDS
T02665
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03013
Nucleocytoplasmic transport
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101243705
03015 mRNA surveillance pathway
101243705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101243705
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101243705
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101243705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Thi4
DUF7283
Motif
Other DBs
NCBI-GeneID:
101243705
NCBI-ProteinID:
XP_004238462
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All DBs
Position
4:complement(68216769..68222144)
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AA seq
500 aa
AA seq
DB search
MADASITSTATSSIAASTTANPPESKSWADQADEIDQAEQSSASNEDAAAEINIGSLQVD
ESKRDNSTLSDPEDSSIEAVTSGDTMYKSAKRFEDLNLSPELLKGLYVQMQFERPSKIQE
ISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRIDPKLAAPQALCICPTRELAIQNME
VLLKMGKFTGITSELGIPADSANYIPISKRPPVTAQVVIGTPGTINKWVTGRKLGMSCMK
ILVFDEADHMLAESGFQDDSIRIMKAIVKASANCQVLLFSATFGENVKAFVTKIVQDLFV
QDYNQMFVKKEELSLDSVKQYKVQCPDELSKIMVIKDRILELGQKVGQTIIFVRTRNSAS
MLHKSLVDYGYEVTTIQGALRQEDRDKIIKEFKDGLTQILISTDLLARGFDQSQVNLVVN
YDLPVRHESPTEPDHEVYLHRIGRAGRFGRKGAIFNLLCSDRDNMLMSKIENHFNHQVAE
IPSWNSEEDFENALKIAGLL
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgcttccattacctccactgccaccagtagcatcgccgcttctacgacagca
aacccacccgaatccaaaagttgggcagaccaagccgacgaaatcgatcaagctgagcag
tcttccgcttctaatgaggacgctgctgccgagataaatatcggatctctacaagtcgat
gagtccaaaagagacaactccactctctctgatccggaagattccagcatagaagcggtt
acatctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcct
gagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaa
attagtttgcctatgattcttacgcctccgtacaagaatcttattgctcaggctcataac
ggttctggtaaaactacttgctttgtgcttgggatgttgagtcgaattgatccaaagctt
gctgcccctcaagctctctgtatctgtccaaccagagaattggctattcagaatatggaa
gtgctattgaagatggggaagttcactggcataacatcagagttaggtatcccagcagat
tctgccaactatattccaatttcaaaacgtccacctgttacggcacaagtagtgattggc
acacctgggactataaacaagtgggtgacgggaaggaaactgggcatgagttgcatgaaa
attcttgtgtttgatgaagcagaccacatgttggcagagagcggttttcaggatgattcc
ataagaataatgaaggcaattgttaaagccagcgctaactgccaggtgcttctcttttct
gcaacttttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatcttttcgtg
caagattacaaccaaatgtttgtgaagaaagaagaactttcgctggattcagtgaagcag
tataaagtacagtgtccagatgaactttcaaaaattatggtgattaaagacagaatactt
gaactaggacagaaggtggggcaaacaattatattcgttcgtaccagaaacagtgcaagt
atgttgcataagtcattggttgactatggctatgaagtgacaacaattcaaggtgccctt
aggcaagaagacagagacaaaataatcaaggagttcaaagatggattgacacaaattctt
atatcaactgatcttcttgctcggggatttgaccaatcacaggttaatttggtggttaat
tatgacctccctgtgagacatgagagtccaacagagccagatcatgaggtatacttgcat
cggattggtagagcaggacgttttggacgcaaaggtgcgatattcaacttgctgtgcagt
gaccgagacaacatgctaatgtcaaagattgagaaccatttcaaccatcaagtggctgag
attccctcatggaatagtgaagaagactttgaaaatgctctgaagatagctggcttgctg
taa
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