Solanum lycopersicum (tomato): 101243728
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Entry
101243728 CDS
T02665
Name
(RefSeq) WD-40 repeat-containing protein MSI4 isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03082
ATP-dependent chromatin remodeling
sly03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101243728
03083 Polycomb repressive complex
101243728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sly03036
]
101243728
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
101243728
Histone modification proteins
HAT complexes
HATB complex
101243728
HDAC complexes
Sin3A-HDAC complex
101243728
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
101243728
PRC2.2
101243728
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
101243728
Heterochromatin formation proteins
Other heterochromatin formation proteins
101243728
Chromatin remodeling factors
NuRD complex
101243728
NuRF complex
101243728
NuRF complex (fruit fly)
101243728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
Beta-prop_EIPR1
CAF1C_H4-bd
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_DCAF12
Beta-prop_TEP1_C
Beta-prop_HPS5
eIF2A
WD40_RFWD3
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
101243728
NCBI-ProteinID:
XP_004243757
UniProt:
A0A3Q7HBA0
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Position
7:49252593..49276704
Genome browser
AA seq
495 aa
AA seq
DB search
METPSSQPKRRGRPKGSAAKSKDEREKEPHSSGKMRGSASKKAAAVDEEYVQWKSLVAVL
YDWFANHNLIWPSLSCRWGAVVEEGKYKNRQRLYLSEQTDKSVPNTLIIANCDVVKPRVA
AENHIANFNEEARSPFVKKYKTIIHPGEVNRIRELPQNKNIVATHTDGPEVLIWDIEAQP
NKHAVYGAAASRPDLVLSGHQDNAEFALALSPMEPFVLSGGKDKTVVLWSIQDHISTLAA
DATKSAGSGGSIIKSADNPSIGPRGIFHGHADTVEDVQFCPSSSQEFCSVGDDSCLILWD
ARVGNNPAVKVEKAHDADLHCVDWNPHNDNLIITGSADNSVRLFDRRNLTSDGVGSPVHM
FEHHTAAVLCVQWCPNRSSVFGSCAEDGLLNIWDYEKVGAAKDSDIESDEDEEESPPGLF
FQHAGHRDKIVDFHWNACDPWTIVSVSDDAETSGGGGTLQIWRMIDMLYRPKAEVLAEMQ
HFKDHVGKCTPKCKG
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgccttcttcgcagcccaaaaggcgtggcaggccaaagggttctgctgccaaa
tccaaagacgaaagagaaaaggaacctcacagttccggcaagatgagaggtagtgctagc
aagaaagctgctgctgtggacgaggagtatgttcagtggaagtcactcgttgctgtcctc
tatgactggttcgctaatcacaacctcatttggccttcgctctcttgcaggtggggtgca
gtagttgaggagggtaaatataaaaaccgccagcgactctacctttctgaacagacggat
aagtcagtgcctaatactttgatcatcgccaattgtgatgtggttaagcccagggttgca
gcagaaaatcatattgcaaatttcaatgaagaggcacgctcgccatttgtgaagaagtac
aaaaccataatacatccgggagaggttaacagaatcagagaactcccgcagaacaaaaac
atagtggcaacccatactgatggtcctgaagttctcatttgggacattgaagctcagcct
aacaagcatgctgtctatggtgctgctgcttcgcgtccagatctggtattaagtggacat
caggacaatgcagaatttgctctggctctgtcccccatggaaccctttgtcctctctgga
gggaaggacaagactgttgtattatggagcattcaagatcacatttcaacattggcagca
gatgcaaccaagtctgctggatctggtggctctataattaagtctgctgataatccttct
attggaccacgtggtatcttccatggccatgcggataccgttgaagatgttcagttttgt
ccttcaagttcccaggaattctgtagtgttggtgatgattcatgcctcatattgtgggat
gctcgtgttggtaacaatcctgctgtaaaggttgagaaagctcatgatgctgatcttcat
tgtgtcgattggaatcctcacaatgacaatcttatcataactgggtccgctgataattca
gtacgcttatttgaccggcgaaatttgacttcagatggggttgggtcaccagtacatatg
tttgaacatcacacagctgcagttctctgtgttcagtggtgtccgaataggtcttctgtg
tttgggagctgtgcagaggatggtctcttaaatatttgggactatgagaaggttggcgca
gcaaaagattctgatattgaatctgatgaagatgaagaggagtctcctccaggcttgttt
tttcagcatgctggccacagggataagattgtggactttcactggaatgcttgtgatcca
tggactattgttagtgtatctgatgatgcagagacctctggtggagggggcacattacag
atatggcgtatgattgatatgttgtaccggccgaaggctgaagttttggctgagatgcaa
catttcaaggaccatgtgggcaagtgtacccctaagtgcaaaggctga
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