Solanum lycopersicum (tomato): 101244332
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Entry
101244332 CDS
T02665
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101244332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101244332
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
101244332
mRNA cycle factors
Common to processing body (P body) and stress granule
101244332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
101244332
NCBI-ProteinID:
XP_025883518
UniProt:
A0A3Q7JFJ6
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All DBs
Position
10:61097242..61105606
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AA seq
967 aa
AA seq
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MAIQMDSSLDHSSRERVQRLFNKNVELDNKRRKAAQARVCSDPNAWQQMRENYEAIILEN
HAFSEQHEIEYALWQLHYRRIEELRARFNAAIASSGSTSQTGKGPPRNGSDNIIKIRTQF
KTFLSEATGFYHDLMVKIRAKYGLTVGGFSDDPGDQIPSSNEANKSIEVKKGLVSCHRCL
IYLGDLARYRGLYGEGDSKARDLAAASSYYTQASSLWPSSGNPHHQLAILASYSSDELVA
IYRYFRSLAVENPFTTARDNLIIAFEKNRQYFSQLPVDAKASSTKVTPSRTTGRGRGKYE
TRPSLKDGKVEASLPKEKALSTSEIFKTFSTGYVRLNGILFTRTSLETFDEVLLMVKNDL
LELLSSGSDEKYNFGSTAADCRLAIVRLVAILIFTIHNVIRENDNQSYAGILQRSVLLQK
AFTAAFEFMGHLVERCIQLNDPSSSFLLPGILVFVEWLACHQDIALGNESEENQARARSC
FWKNCISFFNKLMSTGSKFVDEDEDETCFFNMSRYDEGETGNRLALPEDFELRGFVPLLP
AQLILDFSRKCSFGGDSGSKEKKCRLQRMIAAGKVLATVVRVGEEGIYFDTRGKKFVIGM
EPQTSDNYLLNGLNGTKLSGIELESPDAGQLTVGDLLPKQQLYVECEEEDEVIVFKPSVI
EKSNDISSSAMTSAVPVAGISVVNASSGASMECVDSCCEMGPFPSALDGLRLQNGWSTTR
LPTSISLTNTQYMQAIQPSTSMWSVEQGAFMNGLGGLSLTGNGLMTEAELLNHPEMVSPA
AAHSAPLPQSVKFSTANNIHFQVPEAAMSSTFSSLAPSVAFSDSMSMKSLAITQTGMKKN
PVCRPGRHLGPPPGFGSVSSKVDDSSFASTLKNENNPIPRMDDYSWLNGYQLPSAHQSIV
YNNSDNHSAQPYHSVSNSSLVGISFPFPGKQVPSLHMQSDIQKANNQSVGLPQQYQGQSL
WQDRFFV
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggccattcagatggatagcagtttagatcattcgtcacgggaacgcgttcagcggctt
ttcaacaagaatgtggagctggataacaagcgtaggaaagcagcacaagctagagtatgt
tctgaccccaacgcatggcaacaaatgcgtgaaaactatgaagctatcatccttgagaat
catgctttttctgaacaacatgaaatagagtacgccttgtggcagttgcattatagaaga
attgaagaactgcgtgcacgcttcaatgctgcaatagcttcaagtggatcaacctctcag
actgggaaaggtccacctcgtaacggttcggataacatcataaagatccggacgcagttc
aagacttttctgtcagaagcaactggcttctatcatgatttgatggtgaaaatcagggca
aagtatggcctgacagtaggaggtttctctgatgatccaggggatcagattccttcttct
aatgaagctaataagtctattgaggtgaagaaaggcttggtatcctgccatcgttgtttg
atttatctgggtgatcttgctcggtacagaggcttatatggtgagggtgactctaaagct
cgtgaccttgcggcagcatcaagttattacacgcaagcttcttcattgtggccatcaagt
ggcaaccctcatcatcagcttgcaatattggcctcctattccagtgatgagttggtggca
atctatcggtattttcgtagtcttgcagtagagaatccttttacgactgcaagggacaac
ctgatcattgcatttgagaagaatcgtcaatatttctcccagctgccagtggatgctaag
gcttcgtctaccaaggtaactccttcccgaacaactggtagaggacgaggtaaatatgaa
acaaggccgtctctgaaagatggaaaggttgaggcaagtttaccaaaggaaaaagcattg
agtacatctgaaatcttcaaaacctttagcacagggtatgttcggttgaatggcattctc
ttcacgcgcactagcttggagacctttgatgaagtgttgttgatggttaagaatgatctg
cttgagcttctctcttctgggtctgatgagaagtataattttggttcaactgctgctgac
tgcagactggcaattgtcaggctcgtggccatcttaatattcaccatccataatgtgatt
agggaaaatgataatcagtcatatgccgggattctacaaagatcagttcttctgcagaag
gcatttactgctgcttttgagttcatgggtcatctggttgagagatgtatccagttaaat
gatccctcatcaagcttcttattgcctggtattttggttttcgtagaatggttagcctgc
catcaagatattgcacttggtaatgaatcagaggaaaaccaagctagggctagatcctgt
ttctggaagaactgtataagtttctttaataagctaatgtcaactgggtctaagtttgtc
gatgaagatgaagatgaaacatgctttttcaatatgagcaggtatgatgaaggtgagact
ggcaatcgtcttgcgttgccggaagactttgaactcagaggatttgttcctcttcttcca
gcacagcttatccttgacttctcaaggaaatgttcttttggtggtgatagtggaagtaaa
gagaagaagtgccgtcttcagaggatgattgcagctggaaaggttcttgctactgtggtc
cgggttggagaagagggaatatattttgacacaaggggaaagaaatttgtcattggtatg
gagccccaaacttctgataattatctacttaatggcttaaatggtaccaaattaagtggt
attgaactggaaagtccagatgctggacagttgactgtgggagatcttctgccgaagcag
caattgtatgtggaatgtgaagaagaagacgaagttattgtttttaagccatcagtgata
gaaaaatctaatgacatctcttcaagtgctatgacctcagcggttcctgtagctggtatt
agtgttgtcaatgcttcttctggtgctagcatggagtgtgttgattcgtgttgtgagatg
gggccatttccatctgcactcgatggattgaggttgcagaatggttggagtactacaagg
ctgccaacaagcatttctcttactaatacccaatatatgcaggcaatccaaccaagtact
tcaatgtggtctgtagagcaaggtgcttttatgaatggattgggtggcttgagcttgaca
ggaaatgggctaatgacagaagctgagttgctaaatcatccagaaatggtgtcacctgca
gcagcacattcagctcctttgccacagtctgtgaagttcagcactgcaaataatattcac
ttccaggttcctgaggctgctatgtcatctaccttcagttcacttgcaccctccgtagct
ttctccgatagcatgtcaatgaaatctttagcaattactcaaacaggaatgaagaaaaat
ccagtgtgccgacctggtaggcatctgggtccacctccagggtttggttctgtttcttcc
aaagtagatgactcttcatttgcgtcgacacttaaaaatgaaaataaccccatccctcgt
atggatgattatagctggttgaatggatatcagttaccttcagcacatcagagcattgtt
tacaataactcggacaatcattcagctcaaccatatcactctgtaagcaatagtagctta
gtcgggattagctttcctttccctgggaagcaggtgccctctctgcacatgcagtcagat
atccagaaagcaaataaccaatctgttggattgcctcagcagtatcaaggacagtccctg
tggcaagatcgtttctttgtgtga
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