Solanum lycopersicum (tomato): 101245436
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Entry
101245436 CDS
T02665
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3
KO
K14948
polypyrimidine tract-binding protein 2
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101245436
Spliceosome [BR:
sly03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
101245436
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RL
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
101245436
NCBI-ProteinID:
XP_004252004
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All DBs
Position
12:complement(11902327..11910032)
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AA seq
441 aa
AA seq
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MSDPSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVKALQF
YLNVQPSIRGRNVYVQFSSHQELTTMDQNVQGRGDEPNRILLVTIHHMLYPITVDVLHQV
FSPHGFVEKIVTFQKSAGFQALIQYQVQQSSVSARNSLQGRNIYDGCCQLDIQFSNLDEL
QVNYNNERSRDFTNPNLPSEQKGKSSQQGYGDMYSFQGSGVHPGGFPQMGNAEAIAAAFA
GGLPPGISGTNDRCTILVSNLNSDRINEDKLFNLCSLYGNIVSIKILRNKPDHALVQLGD
GFQAELAVHFLKGAVLFEKRLEVNFSKYPNITTGPDTHDYSNSNLNRFNRNAAKNYRYCC
SPTKMIHLSSLPQDVTEAEIIAHLEEHGPIVNSKLFEMNGKQQALVLFEKEEQATEALVC
KNATSLGSSTIRISFSQLQSI
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatccttcaaaggtcgttcatgttcgcaatgtggggcatgagatctcggagaat
gacttgcttcaactattccaaccatttggcgtcattacaaaacttgtaatgctcagggcg
aaaaatcaggccctcttgcaaatgcaagatgtcccttcagctgtaaaggcattgcagttc
tacttgaatgttcaacccagcataagggggaggaatgtttacgttcaattctcatctcac
caagaattgacaactatggatcaaaatgtacaaggccgtggagatgagcctaatcgaatt
ctcttagtcacaatacatcacatgctataccctataaccgtggatgtgctgcatcaagtg
ttttctccacatggatttgtagagaagattgtcacatttcagaagtcggctggttttcaa
gctttgatccagtatcaagtacaacagagttctgtttctgcaaggaactcacttcagggg
cgtaatatatatgatggctgctgtcagcttgacatacagttctctaatctagatgaattg
caagtgaactacaataatgaacgttcaagggacttcactaacccaaatctaccatcagaa
cagaagggcaaatcctctcaacaaggatatggagacatgtattccttccaaggttctgga
gttcatccaggtggatttcctcagatgggaaatgcagaagcaattgcagctgcgtttgct
ggtggtctgccacctggaattagcgggacaaatgacagatgcactattcttgtttcaaat
ttaaattcagatagaataaatgaggacaaactttttaatctgtgctctctttatggaaat
attgtcagcattaagattctgcgcaataaaccagatcatgccttagttcagctgggtgat
gggttccaggcggagctggctgttcactttttgaagggtgccgtgttatttgaaaagcgt
ctggaagtcaacttctcaaagtatcccaatattactacaggacctgacacacatgactac
tcaaattcaaatctaaaccgctttaaccgtaatgctgctaaaaactatcggtactgctgc
tcccctaccaagatgatccacctatcctccttaccccaggatgtaacggaggcagagatt
atcgcacatttggaggagcatggtcccatagtcaatagtaagctttttgagatgaacggc
aaacagcaggctcttgttctttttgaaaaggaggagcaggcaactgaggcactcgtatgc
aaaaatgctacatctcttggtagctcaaccatccggatttcgttttctcagttacagagc
atctga
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