Solanum lycopersicum (tomato): 101245658
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Entry
101245658 CDS
T02665
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sly03009
]
101245658
03036 Chromosome and associated proteins [BR:
sly03036
]
101245658
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101245658
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
Pre-60S particles
Helicases
101245658
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101245658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
FlpD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101245658
NCBI-ProteinID:
XP_004240751
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All DBs
Position
6:26774059..26780447
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AA seq
683 aa
AA seq
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MPALVVTEETMASELSKKKMKKTPKTDIETPTDKKTKEKKSKKSKIESGSDSEDAKRSKK
KEKKRKALDLDGEKSDTSSEICEPVDLKKNKKAKFDDEQVMVEKKVEDPNALSNFRISKP
LKEALNSKGIEALFPIQAMTFDDILDGCDLVGRARTGQGKTLAFVLPILESLTNGPTKAL
RKTGYGKAPSVLVLLPTRELALQVFADFEVYGRAVGLTSCCLYGNSPMGAQQAQLKRGVD
IVVGTPGRVKDHIERGNIDFGSLKFRVLDEVDEMLKIGFVDDVEFILGKVEDASLVQTVL
FSATLPVWVKHIASKFLKPDKKTADLVGNEKMKASKNVRHIIIPCSSSARPQLIPDIIRC
YGSGGRTIIFTETRALASELAGLLPGASALHGEIQQNQREATLKGFRSGKFMTLVATNVA
ARGLDIDDVQLIIQCEATSDVEAYIHRSGRTGRAGKSGVAVMLYDPRKSNISRIEKESGV
TFEHLSAPQPADVAKAAGKEAADIIADISDSVIPVFKAAAEELLNTSDLSPAELLAKALA
KAAGYSEIKTRSLLTSMENCVTLLLECGRPIFSPSFVYSVLRRFLPEEKVESINGLTLTA
DGKGAVFDVAAEHLDEFLSGQKTAHGVNIEVVEALPPLQEREKPRGGRFGGGGRGGGFGN
RRGGGGFSGGRGGRGNGNFGRRW
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcacttgttgtaactgaagaaacaatggcctccgagctatccaagaaaaaaatg
aagaagacacccaaaactgatattgaaactcctactgataagaaaaccaaagagaaaaag
tcaaaaaaatccaagattgagtctgggtctgattcagaggacgctaaaaggagtaaaaag
aaagagaaaaagagaaaagctttggacttggatggtgagaagagtgatacgagctcagag
atatgcgagcccgtagatttgaagaagaataaaaaggctaaattcgacgacgaacaagtg
atggttgagaagaaagtcgaggatcctaatgctttgtctaattttaggatttcaaagcct
ttaaaagaggctttgaattctaagggaatagaagcactttttcctattcaagctatgact
tttgatgatattcttgatggatgtgatttggttggtcgagctcgtactgggcagggtaaa
acgctggcctttgttttacccatattggagtccctaacgaatggtcctactaaagcatta
cgaaaaacagggtatgggaaggctcctagtgttctggtgcttttacctactagggaattg
gcacttcaggtgtttgctgactttgaagtctatggccgggctgttgggctcacttcatgc
tgtttgtatggaaattctcctatgggggcacaacaggctcaactaaaaagaggagttgac
attgtagtgggtactcctggaagggttaaggaccacattgaaaggggaaatattgatttc
gggtctttgaagttccgtgttcttgatgaagtcgatgaaatgttaaaaattggttttgta
gatgatgtcgaatttattttaggcaaggtcgaagatgcaagcctagttcaaacagttctt
ttcagtgccactttgccagtctgggtgaagcatattgcttctaagtttctgaaaccagat
aagaaaacggctgaccttgttggtaatgagaaaatgaaggccagtaaaaatgtgaggcat
attattattccatgctctagttctgcaagacctcagcttattcctgatatcattcggtgc
tacggcagtggaggacgtacaattatttttactgagacaagggcgctggcttcagagcta
gctggcttactgcctggggcaagtgctttgcatggggagatacaacagaaccagcgtgag
gctacacttaaaggattcagatcaggcaaattcatgacattagtggccacaaatgtggca
gcccgtggattggatatcgatgatgttcagttaattatccagtgcgaagccactagtgac
gtggaagcatacattcatcgatctggaaggacaggacgggctggaaagagtggcgttgct
gtaatgctgtatgatccaaggaagtcaaacatttctagaatcgaaaaagaatctggtgtg
acctttgagcatttgtctgctcctcagccagctgatgttgccaaggcagctgggaaagaa
gctgctgatataattgcggatatttctgatagtgtcatacctgtatttaaggctgctgca
gaggagcttctgaatacttctgacctatcaccagcagaattacttgcgaaagctcttgcc
aaggctgctggctattctgagatcaagactcgatcgcttcttacttctatggagaactgt
gttactctgcttctcgagtgtgggagacccatcttctcaccttcctttgtctatagtgtc
ctgaggaggttcttgcctgaggagaaggttgaatcaatcaatggtcttactttgacagct
gatggaaagggggcagtttttgatgttgctgctgagcacttggatgaatttctctcaggc
caaaaaactgcacatggggtaaatatagaggttgtggaagcgctgcctcctttgcaagag
agagagaagccaagaggtggaagatttggaggtggtggccgtggcggcggcttcggtaac
agaagaggcggaggtggcttttctggaggaagaggggggagaggtaatggcaactttggt
cgcagatggtaa
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